View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17952_low_17 (Length: 344)
Name: NF17952_low_17
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 4742022 - 4741775
Alignment:
| Q |
25 |
ctcatagatcgtggcgcgatacttcacttgtcttatatgtcaggaagcatcaatgtagcattgtgccacaatgtagcaatatcgtgtcacggtttgtttc |
124 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
4742022 |
ctcatagatcgtggcgtgatacttcacttgtcttttatgttaggaaacatcaatgtaacattgtgccacaatgtagcaatattgtgtcacgattagtttc |
4741923 |
T |
|
| Q |
125 |
agaattcaaatcttgttttgacactcccccaaattgtttcatgaatcaattattttgcgccacgaaattatgtgaattgaaatgtccatttttgctttta |
224 |
Q |
| |
|
||||||||||| || |||||||||||| ||||| ||||||||| || || | | |||||| ||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
4741922 |
agaattcaaattttattttgacactccttcaaatcgtttcatgatgcacttctctcccgccacaaaattatgtgaattgaaatgttgatttatgc-ttta |
4741824 |
T |
|
| Q |
225 |
aaatcatggcacgatgctaaattccttggtaattgattttcctatcctt |
273 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4741823 |
gaattgaggcacgatgctaaattccttggtaattgattttcctatcctt |
4741775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 4753323 - 4753231
Alignment:
| Q |
23 |
tgctcatagatcgtggcgcgatacttcacttgtcttatatgtcaggaagcatcaatgtagcattgtgccacaatgtagcaatatcgtgtcacg |
115 |
Q |
| |
|
||||||||| |||| ||| ||| |||||||||||||| ||||| || ||||||||||| || |||||| ||||||| || ||||||||||| |
|
|
| T |
4753323 |
tgctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaaaatcgtgccataatgtagaaaaatcgtgtcacg |
4753231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 4741121 - 4741086
Alignment:
| Q |
287 |
catgcattaaagaataaattattctcttatattctt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4741121 |
catgcattaaagaataaattattctcttatattctt |
4741086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 4752969 - 4752933
Alignment:
| Q |
286 |
gcatgcattaaagaataaattattctcttatattctt |
322 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4752969 |
gcatgcattaaagaataaattattctgttatattctt |
4752933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University