View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17952_low_26 (Length: 269)

Name: NF17952_low_26
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17952_low_26
NF17952_low_26
[»] chr3 (31 HSPs)
chr3 (17-255)||(10376114-10376352)
chr3 (17-255)||(10088352-10088590)
chr3 (28-255)||(10580163-10580390)
chr3 (17-255)||(10195235-10195473)
chr3 (17-248)||(10434313-10434544)
chr3 (17-237)||(10076846-10077066)
chr3 (37-248)||(8860855-8861066)
chr3 (17-247)||(9838431-9838661)
chr3 (17-247)||(9849309-9849539)
chr3 (26-255)||(11149132-11149361)
chr3 (37-248)||(11160306-11160517)
chr3 (17-248)||(10888875-10889106)
chr3 (26-248)||(11131304-11131526)
chr3 (17-248)||(11768803-11769034)
chr3 (37-255)||(10364087-10364305)
chr3 (49-224)||(13289258-13289433)
chr3 (26-224)||(13332497-13332695)
chr3 (26-224)||(13160573-13160771)
chr3 (191-248)||(10541543-10541600)
chr3 (26-224)||(13170624-13170822)
chr3 (49-224)||(13343682-13343857)
chr3 (191-248)||(10517057-10517114)
chr3 (191-248)||(11782422-11782479)
chr3 (190-248)||(10500146-10500204)
chr3 (149-222)||(10126511-10126584)
chr3 (149-222)||(10260281-10260354)
chr3 (191-248)||(10526928-10526985)
chr3 (149-222)||(10031586-10031659)
chr3 (190-247)||(10085678-10085735)
chr3 (149-222)||(10183822-10183895)
chr3 (190-247)||(10192598-10192655)
[»] chr2 (1 HSPs)
chr2 (17-255)||(26906459-26906697)
[»] scaffold0083 (1 HSPs)
scaffold0083 (37-255)||(50097-50312)
[»] chr8 (2 HSPs)
chr8 (17-248)||(44957978-44958209)
chr8 (149-245)||(11484589-11484685)
[»] scaffold0002 (2 HSPs)
scaffold0002 (26-224)||(146217-146415)
scaffold0002 (26-224)||(136166-136364)
[»] chr6 (1 HSPs)
chr6 (58-248)||(31680043-31680239)
[»] chr4 (1 HSPs)
chr4 (206-248)||(17853378-17853420)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 10376114 - 10376352
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376114 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 10376213  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376214 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 10376313  T
Q  217 atctttcaagtcatcaagccattgcttgacagaaggatt 255  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10376314 atctttcaagtcatcaagccattgcttgacagaaggatt 10376352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 10088590 - 10088352
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||| ||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  10088590 tctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttca 10088491  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
     |||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| |||    
T  10088490 tcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagc 10088391  T
Q  217 atctttcaagtcatcaagccattgcttgacagaaggatt 255  Q
    |||||||||||||||||||||| | ||||||| ||||||    
T  10088390 atctttcaagtcatcaagccatagtttgacagcaggatt 10088352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 10580390 - 10580163
Alignment:
Q  28 tgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgatta 127  Q
    |||||| ||||||||| | |||||||||| |||||| || |||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||    
T  10580390 tgcaaacaattgcaggttttcacacatgatcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgatta 10580291  T
Q  128 gttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagt 227  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10580290 gttttgttttgagcttgtgtattctccaccttgcatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaatgatagcatctttcaagt 10580191  T
Q  228 catcaagccattgcttgacagaaggatt 255  Q
    ||||||||||| | ||||||| ||||||    
T  10580190 catcaagccatagtttgacagcaggatt 10580163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 10195473 - 10195235
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||| ||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  10195473 tctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttca 10195374  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
     |||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||| |||    
T  10195373 tcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatcataactgatttcgctgaacaagtcctcagcatcaaagacagc 10195274  T
Q  217 atctttcaagtcatcaagccattgcttgacagaaggatt 255  Q
    |||||||||||||||||||||| | ||||||| ||||||    
T  10195273 atctttcaagtcatcaagccatagtttgacagcaggatt 10195235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 10434313 - 10434544
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||| ||||||||| | ||||| ||| |||||||||| ||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||||    
T  10434313 tctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttca 10434412  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    ||||||||||||||||||||||||| | || ||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||||||||| |||    
T  10434413 acacctgattagttttgttttgagcatgtgtattctccaccttggatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagc 10434512  T
Q  217 atctttcaagtcatcaagccattgcttgacag 248  Q
    |||||||||||||||||||||||| |||||||    
T  10434513 atctttcaagtcatcaagccattgtttgacag 10434544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 10077066 - 10076846
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||| ||||||||| |||||||  || |||||||||| |||| ||||||||||||||||| |||||||| | ||||||||||| |||||||||||||    
T  10077066 tctttattctgtgcaaacaattgcaacctttcacacatgatcttcgtttgagaattgatctctttgtagaagctattaaaaggagatgaaaggaagttca 10076967  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| |||    
T  10076966 acacctgattagttttgttttgagcttgtgcattctccaccttgcatcgcagtgaatcgtaactgatttcgttgagcaagtcctcggcatcaaagacagc 10076867  T
Q  217 atctttcaagtcatcaagcca 237  Q
    ||||||||||| |||||||||    
T  10076866 atctttcaagttatcaagcca 10076846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 37 - 248
Target Start/End: Complemental strand, 8861066 - 8860855
Alignment:
Q  37 ttgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttt 136  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8861066 ttgcaagctatcacacatgatcttcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttccacacctgattagttttgttt 8860967  T
Q  137 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagcc 236  Q
      ||||| || || ||||||||||||||| |  ||||||||||||||||  |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  8860966 gcagcttgtgtatcctccaccttgcatcgtaatgaatcataactgatttggttgagcaaatcctcagcatcaaagagagcatctttcaagtcatcaagcc 8860867  T
Q  237 attgcttgacag 248  Q
    |||| |||||||    
T  8860866 attgtttgacag 8860855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 9838661 - 9838431
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||| ||||||| | | ||||| |||||||||||||| |||||| || |||||||||||| |||| ||  | ||||||||||||||||||||||||     
T  9838661 tctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttcc 9838562  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| | |    
T  9838561 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaac 9838462  T
Q  217 atctttcaagtcatcaagccattgcttgaca 247  Q
    ||||||||||| ||||||||| || ||||||    
T  9838461 atctttcaagttatcaagccactgtttgaca 9838431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 9849539 - 9849309
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||| ||||||| | | ||||| |||||||||||||| |||||| || |||||||||||| |||| ||  | ||||||||||||||||||||||||     
T  9849539 tctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttcc 9849440  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| | |    
T  9849439 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaac 9849340  T
Q  217 atctttcaagtcatcaagccattgcttgaca 247  Q
    ||||||||||| ||||||||| || ||||||    
T  9849339 atctttcaagttatcaagccactgtttgaca 9849309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 11149132 - 11149361
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | ||||||| | |||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||     
T  11149132 tgtgcaaaaatttgcaggttgtcacacatggtcttcatttgggaattgatctctctgtagatggtgttaaaaggagaagaaaggaagctccacacctgac 11149231  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    |||||||||||   | || || ||||||||||||||||||||| || |||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||    
T  11149232 tagttttgtttgtggattgtgtattctccaccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagatagcatctttcaa 11149331  T
Q  226 gtcatcaagccattgcttgacagaaggatt 255  Q
    ||||||||||||||| ||||||| ||||||    
T  11149332 gtcatcaagccattgtttgacagcaggatt 11149361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 37 - 248
Target Start/End: Original strand, 11160306 - 11160517
Alignment:
Q  37 ttgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttt 136  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||||    
T  11160306 ttgcaagctatcacacatgatcttcatttgggaattgatctctctatagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgttt 11160405  T
Q  137 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagcc 236  Q
       | || || ||||||||||||||||||||| || |||||||| |||| ||| ||||| ||||| |||||||||| |||||||||||||||||||||||    
T  11160406 gtggattgtgtattctccaccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagacagcatctttcaagtcatcaagcc 11160505  T
Q  237 attgcttgacag 248  Q
    |||| |||||||    
T  11160506 attgtttgacag 11160517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 10889106 - 10888875
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    |||||||  |||||||| | ||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||     
T  10889106 tctttatgttgtgcaaaaagttgcaagctattacacatgatcttcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagctcc 10889007  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    |||||||| |||||||||||   | || || ||||||||||||||||||||  || |||||||| ||||  || ||||| ||||| |||||||||| |||    
T  10889006 acacctgactagttttgtttgtggattgtgtattctccaccttgcatcgcaatgattcataactaatttggttcagcaaatcctccgcatcaaagacagc 10888907  T
Q  217 atctttcaagtcatcaagccattgcttgacag 248  Q
    |||||||||||||||||||||||| |||||||    
T  10888906 atctttcaagtcatcaagccattgtttgacag 10888875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 11131304 - 11131526
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | ||||||| | |||||||||  ||| ||||| |||||||||||||  |||| | | |||||||||||||||||||||||| | |||||||    
T  11131304 tgtgcaaaaatttgcaggttgtcacacatggtcttaatttgggaattgatctctccatagatgtttttaaaaggagaagaaaggaagttccagacctgat 11131403  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    |||||||||||  ||||| || ||||||||||||||||||||| || |||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||    
T  11131404 tagttttgtttgcagcttgtgtattctccaccttgcatcgcagtgactcataactaatttgattcagcaaatcctccgcatcaaagatagcatctttcaa 11131503  T
Q  226 gtcatcaagccattgcttgacag 248  Q
    |||||||| |||||  |||||||    
T  11131504 gtcatcaacccattttttgacag 11131526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 11769034 - 11768803
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    |||||||  |||||||| | ||||||||| |||||||||| |||||| || |||||||||||||  |||| | | |||||||| || ||||| ||||||     
T  11769034 tctttattttgtgcaaaaagttgcaggctttcacacatgatcttcatatgggaattgatctctccatagatgtttttaaaaggggatgaaagtaagttcc 11768935  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    ||||||||||||||||||||  ||||| |   ||||||| ||||||||| ||||| |||||||| |||| || ||| || ||||||||||||||||||||    
T  11768934 acacctgattagttttgtttctagcttgtttcttctccatcttgcatcggagggagtcataacttatttgatcgagtaaatcctcagcatcaaagatagc 11768835  T
Q  217 atctttcaagtcatcaagccattgcttgacag 248  Q
     ||||||||||||||||||||||| |||||||    
T  11768834 gtctttcaagtcatcaagccattgtttgacag 11768803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 10364087 - 10364305
Alignment:
Q  37 ttgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttt 136  Q
    ||||||||| |||||||||| |||||| || |||||||||||||| |||||| | || ||||||||  ||||||||||| ||||||||||| || |||||    
T  10364087 ttgcaggctttcacacatgatcttcatctgggaattgatctctctatagaagctattgaaaggagataaaaggaagttccacacctgattacttctgttt 10364186  T
Q  137 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagcc 236  Q
      ||||| |  | ||||||   |||||||||||||||||||||||||||| |  ||||| ||||| |||||||||| ||||||||||||| |||||||||    
T  10364187 ccagcttgtttactctccattgtgcatcgcagggaatcataactgatttcgtgaagcaaatcctcggcatcaaagacagcatctttcaagccatcaagcc 10364286  T
Q  237 attgcttgacagaaggatt 255  Q
    |||| ||||||| ||||||    
T  10364287 attgtttgacagcaggatt 10364305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 13289433 - 13289258
Alignment:
Q  49 acacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgca 148  Q
    |||||| | ||||||||| |||||||||||||  ||||  || ||||||||||| |||| || |||| | |||||||||||  |||||| ||||| |       
T  13289433 acacataatcttcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttc 13289334  T
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 224  Q
    ||||||||||| ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13289333 ttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13289258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 13332695 - 13332497
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||||| |||| || |||| | |||||||    
T  13332695 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagaggttccaaacctgat 13332596  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 224  Q
    ||||  |||||| ||||| |   ||||||||||| ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13332595 tagtcatgttttcagcttgtttcttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13332497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 13160771 - 13160573
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||||| |||| || |||| | |||||||    
T  13160771 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgat 13160672  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 224  Q
    ||||  |||||| ||||| |   ||||||||| | ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13160671 tagtcatgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13160573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 10541600 - 10541543
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10541600 agcaaatcttcagcatcaaagattgcatctttcaagtcatcaagccattgcttgacag 10541543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 13170822 - 13170624
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||| | |||| || |||| | |||||||    
T  13170822 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgat 13170723  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 224  Q
    ||||  |||||| || || |   ||||||||||| ||||| ||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13170722 tagtcatgttttcagattgtatcttctccaccttacatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13170624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 13343857 - 13343682
Alignment:
Q  49 acacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgca 148  Q
    |||||| | ||||||||| |||||||||||||  ||||   | ||||| ||||| |||| || |||| | |||||||||||  |||||| ||||| |       
T  13343857 acacataatcttcatttgtgaattgatctctccatagagatttttaaacggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttc 13343758  T
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 224  Q
    ||||||||| | ||||||||||| || ||  ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13343757 ttctccaccgtacatcgcagggagtcgtagttgatttggttaagcaaatcctcagcatcatagattgcatctttca 13343682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 10517114 - 10517057
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || |||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  10517114 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacag 10517057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 11782422 - 11782479
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || ||||||||||| || |||||||||||||||||||||||||| |||||||    
T  11782422 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacag 11782479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 10500204 - 10500146
Alignment:
Q  190 gagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    |||||| || |||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  10500204 gagcaaatcttcagcatcaaagattgtgtctttcaagtcatcaagccattgtttgacag 10500146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 10126584 - 10126511
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatcttt 222  Q
    ||||||| ||||||||| |||| ||  || ||||||| ||||||||| |||||||||||| |||| ||||||||    
T  10126584 ttctccagcttgcatcgtagggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttt 10126511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 10260354 - 10260281
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatcttt 222  Q
    ||||||| ||||||||| |||| ||  || ||||||| ||||||||| |||||||||||| |||| ||||||||    
T  10260354 ttctccagcttgcatcgtagggcattgtagctgattttattgagcaaatcctcagcatcatagattgcatcttt 10260281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 10526985 - 10526928
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || ||||||||||| || |||||||||||||||| ||||||||| |||||||    
T  10526985 agcaaatcttcagcatcaaatattgcatctttcaagtcatgaagccattgtttgacag 10526928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 10031659 - 10031586
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatcttt 222  Q
    ||||||| ||||||||| | || ||  || ||||||| ||||||||| |||||||||||| |||| ||||||||    
T  10031659 ttctccagcttgcatcgtatggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttt 10031586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 10085735 - 10085678
Alignment:
Q  190 gagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgaca 247  Q
    |||||| || ||||||||||||| | |||||||||||| ||||||||| || ||||||    
T  10085735 gagcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgaca 10085678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 10183895 - 10183822
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatcttt 222  Q
    ||||||| ||||||||| |||| ||  || ||||||| ||||| ||| |||||||||||| |||| ||||||||    
T  10183895 ttctccatcttgcatcgtagggcattgtagctgatttgattgaacaaatcctcagcatcatagattgcatcttt 10183822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 10192655 - 10192598
Alignment:
Q  190 gagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgaca 247  Q
    |||||| || ||||||||||||| | |||||||||||| ||||||||| || ||||||    
T  10192655 gagcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgaca 10192598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 26906697 - 26906459
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    |||||||  |||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  26906697 tctttatgttgtgcaaacaattgcaggctttcacacattatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttca 26906598  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    ||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  26906597 acacctgattagttttgttttgagcttgtgtattctcgactttgcatcgcagggaatcataactaatttcgttgagcaagtcctcaacatcaaagatagc 26906498  T
Q  217 atctttcaagtcatcaagccattgcttgacagaaggatt 255  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  26906497 atctttcaagtcatcaagccattgtttgacagcaggatt 26906459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 50097 - 50312
Alignment:
Q  37 ttgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttt 136  Q
    ||||||||| |||||||||| |||||| || |||||||||||||  |||    | ||||||| ||| |||| |||||||| |||||||| | ||||| ||    
T  50097 ttgcaggctttcacacatgatcttcatctgggaattgatctctccatagt---ttttaaaagaagatgaaaagaagttcatcacctgataaattttgctt 50193  T
Q  137 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagcc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  50194 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaagtcatcaagcc 50293  T
Q  237 attgcttgacagaaggatt 255  Q
    || | ||||||| ||||||    
T  50294 atagtttgacagcaggatt 50312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 44957978 - 44958209
Alignment:
Q  17 tctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttca 116  Q
    ||||||| ||||||||| | |||||||   |||||||| | |||||||||||||||||||||||  |||||| | ||||||||||| ||||||||||||     
T  44957978 tctttatgctgtgcaaaaagttgcagggattcacacataatcttcatttgagaattgatctctccatagaagtttttaaaaggagatgaaaggaagttcc 44958077  T
Q  117 acacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagc 216  Q
    | |||||||||||||||||   | ||| || ||||||||| ||||| |||||||||||||| || ||||  |||||||| ||||| |||||||| || |     
T  44958078 agacctgattagttttgttggcaacttgtgtattctccactttgcaacgcagggaatcatagctaatttggttgagcaaatcctcggcatcaaatattgt 44958177  T
Q  217 atctttcaagtcatcaagccattgcttgacag 248  Q
    || ||||||||||||||||||||| |||||||    
T  44958178 atttttcaagtcatcaagccattgtttgacag 44958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 11484685 - 11484589
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttga 245  Q
    ||||| ||||||||||||| || |||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||   |||||||||||| ||||    
T  11484685 ttctctaccttgcatcgcaaggcatcatagctgatttcattaagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 11484589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 146217 - 146415
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||||| |||| || |||| | |||||||    
T  146217 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgat 146316  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 224  Q
    ||||  |||||| ||||| |   ||||||||| | ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  146317 tagtcatgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 146415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 136166 - 136364
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||| | |||| || |||| | |||||||    
T  136166 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgat 136265  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 224  Q
    ||||  |||||| || || |   ||||||||||| ||||| ||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  136266 tagtcatgttttcagattgtatcttctccaccttacatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 136364  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 31680043 - 31680239
Alignment:
Q  58 cttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgcatt------c 151  Q
    ||||||||| |||||||||||||  || ||| | | ||||||||| |||||||| ||| | ||||||  |||  |||||| ||||| || |||      |    
T  31680043 cttcatttgggaattgatctctccatacaagttttgaaaaggagatgaaaggaaattccaaacctgaccagtgatgttttcagcttgtgtattactattc 31680142  T
Q  152 tccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    |||||||||| ||  ||| ||||||||||||| |  |||||||| |||||||||||| | || ||||||||||| |||||||||||||| |||||||    
T  31680143 tccaccttgcttctaaggcaatcataactgatctggttgagcaaatcctcagcatcatatattgcatctttcaactcatcaagccattgtttgacag 31680239  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 17853378 - 17853420
Alignment:
Q  206 tcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||||||| |||||||| |||||||||||||| |||||||    
T  17853378 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 17853420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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