View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17952_low_28 (Length: 251)

Name: NF17952_low_28
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17952_low_28
NF17952_low_28
[»] chr7 (3 HSPs)
chr7 (19-232)||(43439663-43439875)
chr7 (114-172)||(33473806-33473864)
chr7 (119-159)||(43439328-43439368)
[»] chr1 (1 HSPs)
chr1 (119-169)||(12458519-12458569)
[»] chr4 (1 HSPs)
chr4 (114-171)||(9477537-9477594)
[»] chr2 (1 HSPs)
chr2 (119-172)||(10862744-10862797)
[»] chr6 (1 HSPs)
chr6 (119-155)||(33483358-33483394)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 43439875 - 43439663
Alignment:
Q  19 agagtatgcactccaacacgacacctgatatgatataaacactatatattgacactgctaatgtaaaaaataacaccgacaccgttatatggaactactg 118  Q
    |||||||||||||| ||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  ||| |     
T  43439875 agagtatgcactccgacacgacacctcacatgatacaaacattatatattgacactgctaatgtaaaaaataacaccgacactgttatatggggctatta 43439776  T
Q  119 atttacacctacctaaaaacactgaggtataaattagcaagttaaacccacttacttatttacannnnnnnnnnataagtcttatcaaattgtttacaca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||          ||||||||||||||||||||||||||    
T  43439775 atttacacctacctaaaaacactgaggtataaattagcaagttacacccacttactcatttaca-tttttttttataagtcttatcaaattgtttacaca 43439677  T
Q  219 cctcactaacttac 232  Q
    ||||||||| ||||    
T  43439676 cctcactaatttac 43439663  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 33473864 - 33473806
Alignment:
Q  114 tactgatttacacctacctaaaaacactgaggtataaattagcaagttaaacccactta 172  Q
    |||| ||||||| | ||||||||||||| |||| ||||||||||||||| |||||||||    
T  33473864 tactaatttacatccacctaaaaacactaaggtgtaaattagcaagttacacccactta 33473806  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 43439328 - 43439368
Alignment:
Q  119 atttacacctacctaaaaacactgaggtataaattagcaag 159  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  43439328 atttacacccacctaaaaacactaaggtgtaaattagcaag 43439368  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 12458569 - 12458519
Alignment:
Q  119 atttacacctacctaaaaacactgaggtataaattagcaagttaaacccac 169  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| ||||||    
T  12458569 atttacacccacctaaaaacactaaggtgtaaattagcaagttacacccac 12458519  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 9477594 - 9477537
Alignment:
Q  114 tactgatttacacctacctaaaaacactgaggtataaattagcaagttaaacccactt 171  Q
    |||| ||||||||| ||||||||||||| |||| |||||||||||| || ||||||||    
T  9477594 tactaatttacacccacctaaaaacactaaggtttaaattagcaagctacacccactt 9477537  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 10862744 - 10862797
Alignment:
Q  119 atttacacctacctaaaaacactgaggtataaattagcaagttaaacccactta 172  Q
    ||||||||| ||||||||||||| |||| |||||||||||| || |||||||||    
T  10862744 atttacacccacctaaaaacactaaggtgtaaattagcaagctacacccactta 10862797  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 33483358 - 33483394
Alignment:
Q  119 atttacacctacctaaaaacactgaggtataaattag 155  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  33483358 atttacacccacctaaaaacactaaggtataaattag 33483394  T

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