View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17952_low_36 (Length: 211)
Name: NF17952_low_36
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_36 |
 | |
|
| [»] scaffold0899 (1 HSPs) |
| | |
|
| [»] scaffold1230 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 6235676 - 6235841
Alignment:
| Q |
17 |
atatcccaagtgtgttaagtccgaatagttggtctacagttactggagtcacttgagagcccaaggcgttagaggcattcccagcttcaacatgtttgaa |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6235676 |
atataccaagtgtgttaagtccgaatagttggtctacggtgactggagtcacttgagagcccaaggcgttagaggcattcccagcttcaacatgtttgaa |
6235775 |
T |
|
| Q |
117 |
gaaatcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaatta |
182 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6235776 |
gaaatcttcagctttaacaagtgcagggtctttacagaatttcccattcacaaatactgcaaatta |
6235841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 20353765 - 20353600
Alignment:
| Q |
17 |
atatcccaagtgtgttaagtccgaatagttggtctacagttactggagtcacttgagagcccaaggcgttagaggcattcccagcttcaacatgtttgaa |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20353765 |
atataccaagtgtgttaagtccgaatagttggtctacggtgactggagtcacttgagagcccaaggcattagaggcattcccagcttcaacatgtttgaa |
20353666 |
T |
|
| Q |
117 |
gaaatcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaatta |
182 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20353665 |
aaaatcttcagctttaacaagcgcagggtctttacagaatttcccattcacaaatactgcaaatta |
20353600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 20358090 - 20358252
Alignment:
| Q |
17 |
atatcccaagtgtgttaagtccgaatagttggtctacagttactggagtcacttgagagcccaaggcgttagaggcattcccagcttcaacatgtttgaa |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20358090 |
atataccaagagtgttaagtccgaatagttggtctacagtgactggagtcacctgagagcctagtgcgttagaggcattcccagcttcaacatgtttgaa |
20358189 |
T |
|
| Q |
117 |
gaaatcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaa |
179 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20358190 |
gaaatcttcagctttaacaagtgcggggtctttacagaattttccattcacgaatactgcaaa |
20358252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 5278723 - 5278888
Alignment:
| Q |
17 |
atatcccaagtgtgttaagtccgaatagttggtctacagttactggagtcacttgagagcccaaggcgttagaggcattcccagcttcaacatgtttgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
5278723 |
atatcccaagtgtgttaagtccgaatagttggtctacagtgacaggagtcacttgagagcctagtgcgttagatgcattcccagcttcaacatgtttgaa |
5278822 |
T |
|
| Q |
117 |
gaaatcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaatta |
182 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278823 |
gaaatcttcagctttaacaagtgcggggtctttacagaattttccattcacaaatactgcaaatta |
5278888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 5282373 - 5282208
Alignment:
| Q |
17 |
atatcccaagtgtgttaagtccgaatagttggtctacagttactggagtcacttgagagcccaaggcgttagaggcattcccagcttcaacatgtttgaa |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5282373 |
atataccaagtgtgttaagtccgaatagttggtctacggtgactggagtcacttgagagcccaaggcattagaggcattcccagcttcaacatgtttgaa |
5282274 |
T |
|
| Q |
117 |
gaaatcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaatta |
182 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5282273 |
aaaatctttagctttaacaagcgcagggtctttacagaatttcccattcacaaatactgcaaatta |
5282208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 5286704 - 5286866
Alignment:
| Q |
17 |
atatcccaagtgtgttaagtccgaatagttggtctacagttactggagtcacttgagagcccaaggcgttagaggcattcccagcttcaacatgtttgaa |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5286704 |
atataccaagagtgttaagtccgaatagttggtctacagtgactggagtcacctgagagcctagtgcgttagaggcattcccagcttcaacatgttcgaa |
5286803 |
T |
|
| Q |
117 |
gaaatcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaa |
179 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5286804 |
gaaatcttcagctttaacaagtgcggggtctttacagaattttccattcacgaatactgcaaa |
5286866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 14437437 - 14437383
Alignment:
| Q |
123 |
ttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgca |
177 |
Q |
| |
|
|||||||||||||||||| | |||| ||| |||||||||||||||||||||||| |
|
|
| T |
14437437 |
ttcagctttaacaagcgcatgatcttgacaaaattttccattcacaaatactgca |
14437383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 3134 - 3074
Alignment:
| Q |
121 |
tcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaatta |
182 |
Q |
| |
|
||||||| ||||||||| || |||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
3134 |
tcttcaggtttaacaagtgcatggtctttaca-aattttccatttacaaatactgcaaatta |
3074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1230 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1230
Description:
Target: scaffold1230; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 1269 - 1330
Alignment:
| Q |
121 |
tcttcagctttaacaagcgcggggtctttacagaattttccattcacaaatactgcaaatta |
182 |
Q |
| |
|
|||| |||||||||||| || | ||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
1269 |
tctttagctttaacaagtgcatgatcttttcaaaattttcaattcacaaatactgcaaatta |
1330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University