View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_low_38 (Length: 201)
Name: NF17952_low_38
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_38 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 21266934 - 21266796
Alignment:
| Q |
47 |
aacagtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatagagcacattgtgt |
146 |
Q |
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| T |
21266934 |
aacagtcccacatcggtggtacataaacaaccaagaggaggatttacttattaaagacccttgttttgtaatagtgtagacccaatagtgcacattttgt |
21266835 |
T |
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| Q |
147 |
tctccacttagtttataaaagtggaatgaaaataatttt |
185 |
Q |
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| T |
21266834 |
tctccactttgtttataaaagtggtatgaaaataatttt |
21266796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 21136601 - 21136479
Alignment:
| Q |
47 |
aacagtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatagagcacattgtgt |
146 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||| ||| || || ||||||||| ||||||| ||| |
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| T |
21136601 |
aacagtcccacatcggtggtgcttaaacaaccaagaggaggatttacttataaaag-tccttgtgctgcaattgtttaaacccaatagtgcacattatgt |
21136503 |
T |
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| Q |
147 |
tctccacttagtttataaaagtgg |
170 |
Q |
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| T |
21136502 |
tctccacttagtttatacaagtgg |
21136479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 21311181 - 21311055
Alignment:
| Q |
47 |
aacagtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatagagcacattgtgt |
146 |
Q |
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| T |
21311181 |
aacagtcccatattgatggtacttaaccaacaaagaagaagacttacttataaaaggcccttgtgctctaacagtttagacccaataatgcacattgtgc |
21311082 |
T |
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| Q |
147 |
tc---tccacttagtttataaaagtgg |
170 |
Q |
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| T |
21311081 |
tgctgtccacttagtttataaaagtgg |
21311055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 12653 - 12569
Alignment:
| Q |
50 |
agtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatag |
134 |
Q |
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| T |
12653 |
agtcccacatggatggtgcttaaacaatcaagaggaagatttacttataaaagacccttgtgctctaatagtttagactcaatag |
12569 |
T |
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