View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_low_7 (Length: 537)
Name: NF17952_low_7
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 15 - 524
Target Start/End: Complemental strand, 55259348 - 55258839
Alignment:
| Q |
15 |
agtgtctcttaagaaacgtaagtatacataccttaccttagttcacctacctttaagaattgtggtcttctcaaattctcaaactttgtttaaaattctt |
114 |
Q |
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| T |
55259348 |
agtgtctcttaagaaacgtaagtatacataccttaccttagttcacctacctttaagaattgtggtcttctcaaattctcaaacattgtttaaaattctt |
55259249 |
T |
|
| Q |
115 |
atacgtgtgtctgtgtttgtctatttcagctcaaaccagggtcatcacattcacactgttcattcaacaaccaaccaattctcatggatgcctctgaact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55259248 |
atacgtgtgtctgtgtttgtctatttcagctcaaaccagggtcatcacattcacactgttcattcaacaaccaaccaattctcatggatgcctctgaact |
55259149 |
T |
|
| Q |
215 |
ctgaacactgaatattgagcttgtcttccatctattatcattcatttacttgattcattgatactatagtgttgtagattgattcatttgcttgattttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55259148 |
ctgaacactgaatattgagcttgtcttccatctattatcattcatttacttgattcattgatactatagtgttgtagattgattcatttgcttgattttc |
55259049 |
T |
|
| Q |
315 |
atggcttttgatctttttcttcacaagggtgcattcatttggggttgttcttcaaaacctcattctcaattggattctcattctggcgggttgactgata |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55259048 |
atggcttttgatctttttcttcacaagggtgcattcatttggggttgttcttcaaaacctcattctcaattggattctcattctggcgggttgactgata |
55258949 |
T |
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| Q |
415 |
atctcagatatcaacttgttcacaaatgtactatcttgagtgttttagctcagaaagctgccattcctgttgaagatgagaagccattggttcattctcc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55258948 |
atctcagatatcaacttgttcacaaatgtactatcttgagtgttttagctcagaaagctgccattcctgttgaagatgagaagccattggttcattctcc |
55258849 |
T |
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| Q |
515 |
tcctgatgat |
524 |
Q |
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| T |
55258848 |
tcctgatgat |
55258839 |
T |
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