View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_low_9 (Length: 520)
Name: NF17952_low_9
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 2446767 - 2447260
Alignment:
| Q |
1 |
ccgacaaatgatacacaaggatttggttcctatgcaaatttattgaatctttagattttcacgatttcataatttgtacttatataccatgtgtctgcgt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446767 |
ccgacaaatgatatacaaggatttggttcctatgcaaatttattgaatctttagattttcacgatttcataatttgtacttatataccatgtgtctgcgt |
2446866 |
T |
|
| Q |
101 |
gtgtgtgnnnnnnnacaagaacttaattttatagtagtttaatttaatccttgattgtgtaagtaacacaatttatcatggaattaaggaaatttaattg |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446867 |
gtgtgt-tttttttacaagaacttaattttatagtagtttaatttaatccttgattgtgtaagtaacacaatttatcatggaattaaggaaatttaattg |
2446965 |
T |
|
| Q |
201 |
gagtcttatggtatgacaaatatgtttcttaatttaatcattgattgaatctgaatggggttagtttattgatatataacttggcataagatgactgatc |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446966 |
gagtcttatggtatgacaaatatgtttcataatttaatcattgattgaatctgaatggggttagtttattgatatataacttggcataagatgactgatc |
2447065 |
T |
|
| Q |
301 |
aactcaagtatgatttctgctggaaagcttggactttgcttttgtcggatatatatggctcagtttactgaatagcgggccaggtggctcgagcgaggag |
400 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447066 |
aactcaagtatgatttatgctggaaagcttggagtttgcttttgtcggatatatatggctcagtttactgaatagcgggccaggtggctcgagcgaggag |
2447165 |
T |
|
| Q |
401 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaagctccaaagaactgacacatgtgattacatttaattgtcattt |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447166 |
agtatttaaacataagttgtactttgtaaaccttaagcttgattaatagaaagctccaaagaactgacacatgtgattacatttaattgtcattt |
2447260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 495
Target Start/End: Original strand, 24764831 - 24764861
Alignment:
| Q |
465 |
tgacacatgtgattacatttaattgtcattt |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24764831 |
tgacacatgtgattacatttaattgtcattt |
24764861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 495
Target Start/End: Original strand, 34778390 - 34778422
Alignment:
| Q |
463 |
actgacacatgtgattacatttaattgtcattt |
495 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
34778390 |
actgacacatgtgattacacttaattgtcattt |
34778422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 24547089 - 24547037
Alignment:
| Q |
401 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
453 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||| |||||||| |
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|
| T |
24547089 |
agtatttaaacacaagttgtactttataaaccctaagcttgattaatagaaag |
24547037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 451
Target Start/End: Complemental strand, 34372514 - 34372464
Alignment:
| Q |
401 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaa |
451 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||| | |||||| |
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|
| T |
34372514 |
agtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaa |
34372464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 13855076 - 13855024
Alignment:
| Q |
401 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
453 |
Q |
| |
|
||||||||||||||||||||| | |||| || ||||||||||| |||||||| |
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|
| T |
13855076 |
agtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaag |
13855024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 38779463 - 38779515
Alignment:
| Q |
401 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
453 |
Q |
| |
|
|||||||||||| |||||||||| || ||||| ||||||||| | |||||||| |
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| T |
38779463 |
agtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaag |
38779515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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