View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17953_high_1 (Length: 513)
Name: NF17953_high_1
Description: NF17953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17953_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 43636652 - 43636173
Alignment:
| Q |
1 |
aggtttctctgatgctattgatgagtcttctaagaaatggagtttttctatgaatgatggatctgaaggaggtagtttgttctcgccaagaggagggaat |
100 |
Q |
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| T |
43636652 |
aggtttctctgatgctattgatgagtcttctaagaaatggagtttctctatgaatgatggatctgaaggaggtagtttgttctcgccaagaggagggaat |
43636553 |
T |
|
| Q |
101 |
gttggaaaacctcttgctggtttagagactcaaactaatattcaaaagattaatacaaatgcaacaaaaaacatcaaagaggttcttcatcaatctgtac |
200 |
Q |
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| T |
43636552 |
gttggaaaacctcttgctggtttagagactcaaactaatattcaaaagattaatacaaatgcaacaaaaaacatcaaagaggttcttcatcaatctgtac |
43636453 |
T |
|
| Q |
201 |
atgaaaagaataaacaggtttctggaacaaatgagcatgctaatgctcctgctgcaaagtatgtttatttacatcatccttcttattgtttttagatttt |
300 |
Q |
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| T |
43636452 |
atgaaaagaataaacaggtttctggaacaaatgagcatgctaatgctcctgctgcaaagtatgtttatttacatcatccttcttattgtttttagatttt |
43636353 |
T |
|
| Q |
301 |
acaattgcttagttctgttctgtttagnnnnnnngagtcat-ttttgttcatttcataatcaactaaatcatggaacatgtttgtaaacaagtttgatat |
399 |
Q |
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| T |
43636352 |
acaattgcttagttctgttctgtttagtttttttgagtaatcttttgttcattgcataatcaactaaatcatggaacatgttgataaacaagtttgatat |
43636253 |
T |
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| Q |
400 |
agatcatgtcatgttttggttggctagattagacaaaggtgaaagatattgtaactcataaaaaactagacatgttactg |
479 |
Q |
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| T |
43636252 |
agatcatgtcatgttttggttggctagattagacaaaggtgaaagatattgtaactcataaaaaactagacatgttactg |
43636173 |
T |
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