View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17953_high_3 (Length: 394)

Name: NF17953_high_3
Description: NF17953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17953_high_3
NF17953_high_3
[»] chr5 (4 HSPs)
chr5 (208-383)||(15168536-15168713)
chr5 (18-139)||(15168346-15168467)
chr5 (250-367)||(15173332-15173449)
chr5 (18-66)||(15173084-15173132)
[»] chr7 (6 HSPs)
chr7 (250-367)||(8492642-8492759)
chr7 (252-362)||(8519220-8519330)
chr7 (250-367)||(1523574-1523691)
chr7 (18-66)||(1523325-1523373)
chr7 (18-66)||(8492960-8493008)
chr7 (18-66)||(8519533-8519581)
[»] chr4 (2 HSPs)
chr4 (250-357)||(55809173-55809280)
chr4 (259-357)||(55805854-55805952)
[»] chr8 (1 HSPs)
chr8 (259-357)||(29709698-29709796)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 208 - 383
Target Start/End: Original strand, 15168536 - 15168713
Alignment:
Q  208 tatgcaggtggatgtagctattcatgctgttgataaaatgtgtgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctcta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15168536 tatgcaggtggatgtagctattcatgctgttgataaaatgtgtgttgataaaatgtgtgaagcaggctttacgctctctactcatgtaatgcaatctcta 15168635  T
Q  308 ctagagacttgctcggaaactaatcaacattttcaggtac--tatatatcttacgtaaagcatttaatccatttcttc 383  Q
    ||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  15168636 ctagagacttgcttggaaactaatcaacattttcgggtactatatatatcttacgtaaagcatttaatccatttcttc 15168713  T

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Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 15168346 - 15168467
Alignment:
Q  18 atgaaaagctaattttgtattgttgtgccaaggacaaggtataattttcatctctcatattacggttatcaatcaaataaatataattgtcataaagtca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168346 atgaaaagctaattttgtattgttgtgccaaggacaaggtataattttcatctctcatattacggttatcaatcaaataaatataattgtcataaagtca 15168445  T
Q  118 tccattgctcccttcatatcaa 139  Q
    ||||||||||||||||||||||    
T  15168446 tccattgctcccttcatatcaa 15168467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 250 - 367
Target Start/End: Original strand, 15173332 - 15173449
Alignment:
Q  250 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||| |||||||    
T  15173332 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctgtattagagacttgctcggaaactgatcaacaatttcgggtacta 15173431  T
Q  350 tatatcttacgtaaagca 367  Q
    ||| ||||||||||||||    
T  15173432 tatgtcttacgtaaagca 15173449  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 15173084 - 15173132
Alignment:
Q  18 atgaaaagctaattttgtattgttgtgccaaggacaaggtataattttc 66  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  15173084 atgaaaagctaattttgtattgctgtggcaaggacaaggtataattttc 15173132  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 367
Target Start/End: Complemental strand, 8492759 - 8492642
Alignment:
Q  250 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 349  Q
    ||||||||||||||||||||||  ||||| || ||| |||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||    
T  8492759 tgttgataaaatgtgtgaagcatactttatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatcaaaattttcaggtacta 8492660  T
Q  350 tatatcttacgtaaagca 367  Q
    ||||||||||||| ||||    
T  8492659 tatatcttacgtagagca 8492642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 8519330 - 8519220
Alignment:
Q  252 ttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactata 351  Q
    ||||||||||||||||||||  ||||| || ||| |||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||    
T  8519330 ttgataaaatgtgtgaagcatactttatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatcaagattttcaggtactata 8519231  T
Q  352 tatcttacgta 362  Q
    |||||||||||    
T  8519230 tatcttacgta 8519220  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 367
Target Start/End: Original strand, 1523574 - 1523691
Alignment:
Q  250 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 349  Q
    ||||||||||||||||||||||  || || || ||| |||||||||||||||||| || ||||||||||||| |||||||||| | ||||||||||||||    
T  1523574 tgttgataaaatgtgtgaagcattctgtatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatctagattttcaggtacta 1523673  T
Q  350 tatatcttacgtaaagca 367  Q
    ||||||||||| ||||||    
T  1523674 tatatcttacgaaaagca 1523691  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 1523325 - 1523373
Alignment:
Q  18 atgaaaagctaattttgtattgttgtgccaaggacaaggtataattttc 66  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  1523325 atgaaaagctaattttgtattgttgtggtaagaacaaggtataattttc 1523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8493008 - 8492960
Alignment:
Q  18 atgaaaagctaattttgtattgttgtgccaaggacaaggtataattttc 66  Q
    |||||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  8493008 atgaaaagctaattttgtattgctgtggtaagaacaaggtataattttc 8492960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8519581 - 8519533
Alignment:
Q  18 atgaaaagctaattttgtattgttgtgccaaggacaaggtataattttc 66  Q
    |||||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  8519581 atgaaaagctaattttgtattgctgtggtaagaacaaggtataattttc 8519533  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 55809280 - 55809173
Alignment:
Q  250 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 349  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||| ||||| |||||||||||| |||||||    
T  55809280 tgttgatgaaatgtctgaagcaggctttacgctctctagtcatgcaatgcaatctttattagagacttgttcgaaaactgatcaacattttcgggtacta 55809181  T
Q  350 tatatctt 357  Q
    ||||||||    
T  55809180 tatatctt 55809173  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 55805952 - 55805854
Alignment:
Q  259 aatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactatatatctt 357  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  55805952 aatgtctgaagcaggccttacgctctctagtcatgcaatgcaatctttattagagacttgttcggaaactgatcaacattttcgggtactatatatctt 55805854  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 259 - 357
Target Start/End: Original strand, 29709698 - 29709796
Alignment:
Q  259 aatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactatatatctt 357  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  29709698 aatgtctgaagcaggccttacgctctctagtcatgcaatgcaatctttattagagacttgttcggaaactgatcaacattttcgggtactatatatctt 29709796  T

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