View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17953_high_4 (Length: 361)
Name: NF17953_high_4
Description: NF17953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17953_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 184 - 352
Target Start/End: Complemental strand, 1537830 - 1537661
Alignment:
| Q |
184 |
ttctgattgcaa-cgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
282 |
Q |
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| T |
1537830 |
ttctgattgcaaacgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
1537731 |
T |
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| Q |
283 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctttt |
352 |
Q |
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| T |
1537730 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctttt |
1537661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 1537942 - 1537850
Alignment:
| Q |
38 |
ccatatgcattcgcatgatcttaacaaagaccgacgcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggct |
131 |
Q |
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| T |
1537942 |
ccatatgcattcccatgatcttaacaaagac-gaagcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggct |
1537850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 46641786 - 46641851
Alignment:
| Q |
216 |
tgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
281 |
Q |
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| T |
46641786 |
tgtttctagtgctttgtctcctcagatttatatcagcctgtttttccaaagaatcaacatcacaag |
46641851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 46172995 - 46173079
Alignment:
| Q |
197 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
281 |
Q |
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| T |
46172995 |
gctctaactgtcaacggtctgtttctagtgctctgtctcctgggatttatatcaggctgttgttccaaagaaccaacatcacaag |
46173079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 46620412 - 46620350
Alignment:
| Q |
77 |
cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggctgtctggat |
139 |
Q |
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| T |
46620412 |
cattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggat |
46620350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 46639130 - 46639067
Alignment:
| Q |
77 |
cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggctgtctggatg |
140 |
Q |
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| T |
46639130 |
cattattttgcctcatgtacgagccttgcgacaaggattgaaaggatcttggtgtgtctggatg |
46639067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 46641619 - 46641701
Alignment:
| Q |
43 |
tgcattcgcatgatcttaacaaagaccgacgcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatctt |
126 |
Q |
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| T |
46641619 |
tgcattcccatgatctgaacaatgac-gacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctt |
46641701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 46630788 - 46630704
Alignment:
| Q |
197 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
281 |
Q |
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| T |
46630788 |
gctctaactgtcaatggtctttttctattgctctgtctcctcggatttatatcaggctgttgttccaacgaaccaacatcacaag |
46630704 |
T |
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