View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17953_low_6 (Length: 349)
Name: NF17953_low_6
Description: NF17953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17953_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 37768554 - 37768235
Alignment:
| Q |
13 |
gcaaaggttgtaggaactatacttggatttgctggggcattggtgttgacattttacaaaggagtagaatttgatatttggccttttgcaatcaatcttt |
112 |
Q |
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| T |
37768554 |
gcaaaggttgtaggaactatacttggatttgctggggcattggtgttgacattttacaaaggagtagaatttgatatttggccttttgcaatcaatattt |
37768455 |
T |
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| Q |
113 |
tggatccaaagaacgaccacacggaacgtgtcactgatactaccactgaattgttaggtgttctatgtgtcttactcagttgcttctgtttctcaatctg |
212 |
Q |
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| T |
37768454 |
tggatccaaagaacgaccacacggaacatgtcactgatactaccactgaattgttaggtgttctatgtgtcttactcagttgcttctgtttctcaatctg |
37768355 |
T |
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| Q |
213 |
gctcattattcaggtaattaattagttactaaacacaaca---ttatgatcaacttaattaattattgtctatttattgttttattttaatttacatggc |
309 |
Q |
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| T |
37768354 |
gctcatcattcaggtaattaattagttactaaacacaacattattatgatcaacttaattaattattgtctatttattg-----ttttaatttacatggc |
37768260 |
T |
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| Q |
310 |
ataggctaagatcagtgaagtatat |
334 |
Q |
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| T |
37768259 |
ataggctaagatcagtgaagtatat |
37768235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 37781287 - 37781335
Alignment:
| Q |
45 |
tggggcattggtgttgacattttacaaaggagtagaatttgatatttgg |
93 |
Q |
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| T |
37781287 |
tggggcaatggtgatgatattttacagaggagtagaaattgatatttgg |
37781335 |
T |
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