View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17954_high_13 (Length: 379)

Name: NF17954_high_13
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17954_high_13
NF17954_high_13
[»] chr1 (1 HSPs)
chr1 (1-362)||(6639486-6639848)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 6639486 - 6639848
Alignment:
Q  1 gttaatattcctatcatctttcca-ttcatatcaaggtaacatagcactaaatatttaatgagttatggccaccatcataattttcttacaatctcacct 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6639486 gttaatattcctatcatctttccaattcatatcaaggtaacatagcactaaatatttaatgagttatggccaccatcataattttcttacaatctcacct 6639585  T
Q  100 taattattaacatcgtagaccaagcaaaaatggagacacacatctctcgttggtccatcttcgatcaagtagatttgcgcaaaatctaattttcactatt 199  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6639586 taattatta-catcgtagaccaagcaaaaatggagaaacacatctctcgttggtccatcttcgatcaagtagatttgcgcaaaatctaattttcactatt 6639684  T
Q  200 ttggatatgnnnnnnncttacaaaataattgaatttccgtgcttaccgtcattcccnnnnnnngtactacatattctttatc-tttaagttttaacattc 298  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||    
T  6639685 ttggatatgtttttttcttacaaaataattgaatttccgtgcttaccgtcattccctttttttgtactacatattctttatcttttaagttttaacattc 6639784  T
Q  299 ttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6639785 ttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt 6639848  T

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