View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_high_17 (Length: 320)
Name: NF17954_high_17
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 36055890 - 36056170
Alignment:
| Q |
22 |
ggacccttatggataaagtttcacttttttcaagaagtgaatatttttcaggtaacacactttattacacaactaaggctaagttttgtgagagtggaat |
121 |
Q |
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| T |
36055890 |
ggacccttatggataaagtttcacttttttcaagaagtgaatatttttcaggtaacacactttattacacaactaaggctaagttttgtgagagtggaat |
36055989 |
T |
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| Q |
122 |
tatgcatgatattttgattaaatgcagtggtgaaaatgaagggtttaaatcacctgttctgaatgtttgtattgataagaagattgtaatttgtgtgaag |
221 |
Q |
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| T |
36055990 |
tatgcatgatattttgattaaatgcagtggtgaaaatgaagggtttaaatcacctgttctgaatgtttgtattgataagaagattgtaatttgtgtgaag |
36056089 |
T |
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| Q |
222 |
aggttgaagtggaattttaggggtaatcaaacaatttttgttgatgggttgttggtggatttgctttgggatgttcatagt |
302 |
Q |
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| T |
36056090 |
aggttgaagtggaattttaggggtaatcaaacaatttttgttgatgggttgttggtggatttgctttgggatgttcatagt |
36056170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 20085528 - 20085421
Alignment:
| Q |
192 |
attgataagaagattgtaatttgtgtgaagaggttgaagtggaattttaggggtaatcaaacaatttttgttgatgggttgttggtggatttgctttggg |
291 |
Q |
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||||||||||||| ||| ||| |||||||||| ||| | ||||||||||| || |||||||| |||||||||||||| || ||||| ||||||||||||| |
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| T |
20085528 |
attgataagaagaatgtgattcgtgtgaagagattgcaatggaattttagagggaatcaaaccatttttgttgatggtttattggttgatttgctttggg |
20085429 |
T |
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| Q |
292 |
atgttcat |
299 |
Q |
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|||||||| |
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| T |
20085428 |
atgttcat |
20085421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 42021508 - 42021594
Alignment:
| Q |
195 |
gataagaagattgtaatttgtgtgaagaggttgaagtggaattttaggggtaatcaaacaatttttgttgatgggttgttggtggat |
281 |
Q |
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|||||||||||||| || |||||||| ||||||||||||||| | || ||||||||||||||||| ||||| ||| | |||||| |
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| T |
42021508 |
gataagaagattgtgtttaaggtgaagagattgaagtggaattttcgtggcaatcaaacaatttttgtggatggtttggtagtggat |
42021594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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