View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17954_high_2 (Length: 671)
Name: NF17954_high_2
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_high_2 |
 |  |
|
Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 667
Target Start/End: Complemental strand, 43561390 - 43560742
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43561390 |
gaacaggcagtgaacattgcaaatttcatttcgataaactatcacaacagacgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccatttct |
43561291 |
T |
 |
| Q |
119 |
tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561290 |
tctgcttttgtgcatactggtatctttataaattgttggagctattagctcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt |
43561191 |
T |
 |
| Q |
219 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561190 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtt |
43561091 |
T |
 |
| Q |
319 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561090 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
43560991 |
T |
 |
| Q |
419 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43560990 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac |
43560891 |
T |
 |
| Q |
519 |
cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43560890 |
cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt |
43560791 |
T |
 |
| Q |
619 |
attcgcgaaaaagatacaatatagggtagaactcatacctttgcttctc |
667 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43560790 |
attcgcgaaaaagatacaatatagggtagaactcatacctttgtttctc |
43560742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 666
Target Start/End: Original strand, 17729770 - 17730417
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct |
118 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
17729770 |
gaacaagcaatgaacattgccaatttcatttcgatagactatcacaacaggcgttttcgttgtggatttgttttgcgaaatgattgtttaacccgtttct |
17729869 |
T |
 |
| Q |
119 |
tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt |
218 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17729870 |
tctgtttttgtgcatactggtatctttataaattgctggagctattagctcacaatactccattctcggttgttgatgaaagcctagcatttgagatttt |
17729969 |
T |
 |
| Q |
219 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
17729970 |
acaattgattggaaatctcaaatgattttttgagggagcatggtggtccgacctcgaagccttcttacttgatcaagagaagtatagcaggatatttgtc |
17730069 |
T |
 |
| Q |
319 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
418 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||| || |||||| |||||||| || ||||||||||||||| | |
|
|
| T |
17730070 |
gagcaactcgagtatagtaaaaaactcttgacggaaatatctgaagatattcgatttaaagaacaacaggttcttgcggagcaaagaggaatactggctc |
17730169 |
T |
 |
| Q |
419 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac |
518 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17730170 |
aatggaatggttctgtggagggatctgaacaagtctttagagagcaccttgatcacatggccatgcataaacaagaattgaaaaacgagcttacaaatat |
17730269 |
T |
 |
| Q |
519 |
cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt |
618 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
17730270 |
cgatgacgagcttatggaggttcgctcaaacttgaaggaagctctaaaggccagagccaaactggcttctttagagttcaatattttgtctcctaccatt |
17730369 |
T |
 |
| Q |
619 |
attcgcgaaaaagatacaatatagggtagaactcatacctttgcttct |
666 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
17730370 |
attcgcgaaaaagatacaatatagggtagaatttatacctttgtttct |
17730417 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 211 - 387
Target Start/End: Complemental strand, 43569419 - 43569243
Alignment:
| Q |
211 |
gagattttacaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtagga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| || ||||| |||| |||| |||| |
|
|
| T |
43569419 |
gagattttacaattgattggaaatctcaaatggttttttgagggagcatggtggttcgaccttgaaaccttcttactcgatcataagaagtatatcagga |
43569320 |
T |
 |
| Q |
311 |
tatttgtcgagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
43569319 |
tatttgtcgagcaactcgagtatagtgagaaactcgtgacggaaatattcgatgatattcgaactagagaacaacaa |
43569243 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 525 - 666
Target Start/End: Complemental strand, 43570167 - 43570028
Alignment:
| Q |
525 |
cgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcattattcgc |
624 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43570167 |
cgagcttatggaggttcgctcgaagttgaaagatgctctaaaggccagagccaaactggcttctttagagttcaatattttttctcctagcattattcgt |
43570068 |
T |
 |
| Q |
625 |
gaaaaagatacaatatagggtagaactcatacctttgcttct |
666 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||| |||| |
|
|
| T |
43570067 |
gaaaaagataca--atagggtagaacttatgcctttgtttct |
43570028 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 1602059 - 1601625
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct |
118 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||| | |||| ||||| |||||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
1602059 |
gaacagacaatgaacattgccaatttcatttcgatagactatcacgacaggcatcttcattgtggatttgtcta-caaaatgattacttaacttgtttct |
1601961 |
T |
 |
| Q |
119 |
tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt |
218 |
Q |
| |
|
|| | |||| |||||| |||||||||||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
1601960 |
tc-gattttctgcatattggtatctttataaattgcttgagctattagctcacgatactccattctcggttgttattgaaaatctagcgtttgagatttt |
1601862 |
T |
 |
| Q |
219 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||| || |||||| ||||||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
1601861 |
acaattgattggaaatctcaaatggtgtttttagggagcatagtggtctgaactcgaacccttcttactcgatcacgagaagtatagcaggatatttgtc |
1601762 |
T |
 |
| Q |
319 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
418 |
Q |
| |
|
|||||| |||||| |||||| ||| ||||||| ||||| |||| ||||||| || ||||| ||||||||||||||| || ||||||||||| ||| | |
|
|
| T |
1601761 |
gagcaaatcgagtgtagtgagaaattcttgacgtaaataaccgatgatattcaaactagagaacaacaagttcttgcggagcaaagaggaatattggctc |
1601662 |
T |
 |
| Q |
419 |
aatggaacagttctgtggagggatctgaacaagtctt |
455 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
1601661 |
aatggaatggttctgcggaaagatctgaacaagtctt |
1601625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 1601118 - 1601591
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct |
118 |
Q |
| |
|
|||||| ||||| | ||||| ||||||||||||| ||| ||| |||| | |||| ||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1601118 |
gaacagacaatgcatattgccaatttcatttcgaaagaatattacaacatgcgtattcattgtggatttgtcttgcgaaatgattgtttaacccgtttct |
1601217 |
T |
 |
| Q |
119 |
tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt |
218 |
Q |
| |
|
|| | |||| ||||||| ||||||| |||||||| ||||||||||||| ||| | |||||||| || | | || ||||| | ||| ||||||||||| |
|
|
| T |
1601218 |
tctgtttttctgcatacaggtatctctataaatttctggagctattagctcacgatactccattatcaggttttattgaaaatatagagtttgagatttt |
1601317 |
T |
 |
| Q |
219 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
318 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| |||||||||||||| || |||||||||||||| || ||||||||| |||| ||||||||||| |
|
|
| T |
1601318 |
acaattgaatggaaatctcaaacggtgttttgcgggagcatggtggtatgaactcgaagccttcttactctatcacgagatgtatatcaggatatttgtg |
1601417 |
T |
 |
| Q |
319 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
418 |
Q |
| |
|
||||||||||||| |||||| |||||||| | |||||||| || |||||| || ||||| ||||||||||||||| || | |||||||||| || | |
|
|
| T |
1601418 |
gagcaactcgagtgtagtgagaaactcttaatggaaatatctgatgatatttaaactagagaacaacaagttcttgcggagcatagaggaatacgggctc |
1601517 |
T |
 |
| Q |
419 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaa |
492 |
Q |
| |
|
||| || ||||| ||||||||||||||||||||| ||| || |||||| ||||||||||| | |||||| |
|
|
| T |
1601518 |
gatgaaatggttctacggagggatctgaacaagtcttgagatagcaccttgaatacttggccatgtagaaacaa |
1601591 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 1622513 - 1622213
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct |
118 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
1622513 |
gaacagacaatgaacattgccaatttcatttcgatagactatcacgacaagcgtcttcgttgtggatttgtcta-caaaatgattacttaacccgtttct |
1622415 |
T |
 |
| Q |
119 |
tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt |
218 |
Q |
| |
|
|| | |||| |||||| ||||||||||||||||||||| | ||||||| ||||| ||||||||||||| |||| ||||| |||||| ||||||||||| |
|
|
| T |
1622414 |
tc-gattttttgcatattggtatctttataaattgttgcaattattagctcacaatactccattctcggatgttattgaaaatctagcgtttgagatttt |
1622316 |
T |
 |
| Q |
219 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||| || |||||| ||||||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
1622315 |
acaattgattggaaatctcaaatggtgattttagggagcatagtggtatgaactcgaacccttcttactcgatcacgagaagtatagcaggatatttgtc |
1622216 |
T |
 |
| Q |
319 |
gag |
321 |
Q |
| |
|
||| |
|
|
| T |
1622215 |
gag |
1622213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 1621601 - 1622060
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct |
118 |
Q |
| |
|
||||| |||||||| ||||| |||||||||| || ||| ||| |||| | |||||||| ||||||||||||||||| |||||||||||||||| ||| | |
|
|
| T |
1621601 |
gaacaagcaatgaatattgccaatttcattttgaaagaatattacaacatgcgtcttcattgtggatttgtcttgcggaatgattgtttaacccattttt |
1621700 |
T |
 |
| Q |
119 |
tcc-gcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattt |
217 |
Q |
| |
|
| | |||| ||||||| |||||| |||||||| || |||||||||| ||||| |||| || |||||| ||||| |||| |||||||||| |
|
|
| T |
1621701 |
ttttgtttttctgcatacaagtatctctataaatttctg-agctattagctcacaatactc-----tcagttgttattgaaaatctaaagtttgagattt |
1621794 |
T |
 |
| Q |
218 |
tacaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgt |
317 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| |||||| || |||| ||||| |||| ||||||||||| |
|
|
| T |
1621795 |
tacaattgattggaaatctcagatggtgttttgcgggagcatggtggtatgaaatcgaagtcttcttactcgatcgcgagatgtatatcaggatatttgt |
1621894 |
T |
 |
| Q |
318 |
cgagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggtt |
417 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||| || |||||| || ||||| |||||| |||||||| || | ||||||||| ||| | |
|
|
| T |
1621895 |
cgagcaactcgagtgtagtgagaaactcttgacggaaatatctgatgatatttaaactagagaacaacaggttcttgcggagcatagaggaatattggct |
1621994 |
T |
 |
| Q |
418 |
gaatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatg |
483 |
Q |
| |
|
|||| || ||||| ||| |||||||||||||| || ||| | |||||| |||||||||||| |
|
|
| T |
1621995 |
caatgaaatggttctacggatggatctgaacaagtattgagataacaccttgaacacttggccatg |
1622060 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 1622206 - 1622103
Alignment:
| Q |
352 |
gaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttgaatggaacagttctgtggagggatctgaacaag |
451 |
Q |
| |
|
|||||| |||| ||||||| || ||||| ||||||||||||||| || ||||||||||||||| | ||||||| |||||| ||| ||||||||||||| |
|
|
| T |
1622206 |
gaaataaccgatgatattcaaactagagaacaacaagttcttgcggagcaaagaggaatactggctcaatggaatggttctgcggaaggatctgaacaag |
1622107 |
T |
 |
| Q |
452 |
tctt |
455 |
Q |
| |
|
|||| |
|
|
| T |
1622106 |
tctt |
1622103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 29543961 - 29543717
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct |
118 |
Q |
| |
|
||||||| |||||||||| | || ||||| | | | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
29543961 |
gaacaggtaatgaacatttccaacttcatcttcacatactctcacaacatgcgtcttcgttgtggatttgtcttgtggaatgattgtttaacatatttct |
29543862 |
T |
 |
| Q |
119 |
tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt |
218 |
Q |
| |
|
| | || | ||||| | || ||||| |||||| |||||||||| | || || |||||||||| ||||||||||||| |||| | ||||||||||| |
|
|
| T |
29543861 |
ttagtttgtcagcatattattaccttta--aattgtaggagctattacctcataatactccattctatgttgttgatgaaaatctatcttttgagatttt |
29543764 |
T |
 |
| Q |
219 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggt |
265 |
Q |
| |
|
||| |||||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
29543763 |
acatttgatttaaattctcaaatgatagtttgagggagcatggtggt |
29543717 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 29543359 - 29543608
Alignment:
| Q |
19 |
gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgt----cttcgttgtggatttgtcttgcaaaatgattgtttaacccgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||||||| || ||| ||||||| || || ||| ||| ||||||||| | |||||| || |||||||||||| || |
|
|
| T |
29543359 |
gaacaagcaatgaacattgccaatttcatctctatatactatcataatagacgtacgtctttgttgtggatatatcttgcgaa-tgattgtttaacatgt |
29543457 |
T |
 |
| Q |
115 |
ttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgaga |
214 |
Q |
| |
|
| |||| | || | |||| |||||||||| |||||||||||| |||||| | || || | | ||||||| ||||| |||||| | || ||| ||| |
|
|
| T |
29543458 |
tgcttctgtttctcaacatattggtatctttgtaaattgttggaactattaactcaaaataattcattctctattgttaatgaaaatataaattttaaga |
29543557 |
T |
 |
| Q |
215 |
ttttacaattgattggaaatctcaaatggttttttgagggagcatggtggt |
265 |
Q |
| |
|
||||||| |||||| |||||| ||||| | |||||||||||||||||||| |
|
|
| T |
29543558 |
ttttacatctgattgaaaatctaaaatgttattttgagggagcatggtggt |
29543608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 6414402 - 6414366
Alignment:
| Q |
224 |
tgattggaaatctcaaatggttttttgagggagcatg |
260 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6414402 |
tgattggaaatctcaaatggtattttgagggagcatg |
6414366 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University