View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17954_high_2 (Length: 671)

Name: NF17954_high_2
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17954_high_2
NF17954_high_2
[»] chr1 (4 HSPs)
chr1 (19-667)||(43560742-43561390)
chr1 (19-666)||(17729770-17730417)
chr1 (211-387)||(43569243-43569419)
chr1 (525-666)||(43570028-43570167)
[»] chr3 (5 HSPs)
chr3 (19-455)||(1601625-1602059)
chr3 (19-492)||(1601118-1601591)
chr3 (19-321)||(1622213-1622513)
chr3 (19-483)||(1621601-1622060)
chr3 (352-455)||(1622103-1622206)
[»] chr7 (3 HSPs)
chr7 (19-265)||(29543717-29543961)
chr7 (19-265)||(29543359-29543608)
chr7 (224-260)||(6414366-6414402)


Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 667
Target Start/End: Complemental strand, 43561390 - 43560742
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct 118  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||    
43561390 gaacaggcagtgaacattgcaaatttcatttcgataaactatcacaacagacgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccatttct 43561291  T
119 tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
43561290 tctgcttttgtgcatactggtatctttataaattgttggagctattagctcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt 43561191  T
219 acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
43561190 acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtt 43561091  T
319 gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43561090 gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg 43560991  T
419 aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43560990 aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac 43560891  T
519 cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43560890 cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt 43560791  T
619 attcgcgaaaaagatacaatatagggtagaactcatacctttgcttctc 667  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
43560790 attcgcgaaaaagatacaatatagggtagaactcatacctttgtttctc 43560742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 666
Target Start/End: Original strand, 17729770 - 17730417
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct 118  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||    
17729770 gaacaagcaatgaacattgccaatttcatttcgatagactatcacaacaggcgttttcgttgtggatttgttttgcgaaatgattgtttaacccgtttct 17729869  T
119 tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt 218  Q
    || | |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||    
17729870 tctgtttttgtgcatactggtatctttataaattgctggagctattagctcacaatactccattctcggttgttgatgaaagcctagcatttgagatttt 17729969  T
219 acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc 318  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||    
17729970 acaattgattggaaatctcaaatgattttttgagggagcatggtggtccgacctcgaagccttcttacttgatcaagagaagtatagcaggatatttgtc 17730069  T
319 gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg 418  Q
    |||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||| || |||||| ||||||||  || ||||||||||||||| |     
17730070 gagcaactcgagtatagtaaaaaactcttgacggaaatatctgaagatattcgatttaaagaacaacaggttcttgcggagcaaagaggaatactggctc 17730169  T
419 aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac 518  Q
    |||||||  |||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||||||||||||||| ||||     
17730170 aatggaatggttctgtggagggatctgaacaagtctttagagagcaccttgatcacatggccatgcataaacaagaattgaaaaacgagcttacaaatat 17730269  T
519 cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt 618  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||    
17730270 cgatgacgagcttatggaggttcgctcaaacttgaaggaagctctaaaggccagagccaaactggcttctttagagttcaatattttgtctcctaccatt 17730369  T
619 attcgcgaaaaagatacaatatagggtagaactcatacctttgcttct 666  Q
    ||||||||||||||||||||||||||||||| | ||||||||| ||||    
17730370 attcgcgaaaaagatacaatatagggtagaatttatacctttgtttct 17730417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 211 - 387
Target Start/End: Complemental strand, 43569419 - 43569243
Alignment:
211 gagattttacaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtagga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| || |||||  |||| ||||  ||||    
43569419 gagattttacaattgattggaaatctcaaatggttttttgagggagcatggtggttcgaccttgaaaccttcttactcgatcataagaagtatatcagga 43569320  T
311 tatttgtcgagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaa 387  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||| ||||| |||||||    
43569319 tatttgtcgagcaactcgagtatagtgagaaactcgtgacggaaatattcgatgatattcgaactagagaacaacaa 43569243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 525 - 666
Target Start/End: Complemental strand, 43570167 - 43570028
Alignment:
525 cgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcattattcgc 624  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||     
43570167 cgagcttatggaggttcgctcgaagttgaaagatgctctaaaggccagagccaaactggcttctttagagttcaatattttttctcctagcattattcgt 43570068  T
625 gaaaaagatacaatatagggtagaactcatacctttgcttct 666  Q
    ||||||||||||  ||||||||||||| || |||||| ||||    
43570067 gaaaaagataca--atagggtagaacttatgcctttgtttct 43570028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 1602059 - 1601625
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct 118  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| | |||| ||||| ||||||||||||||  ||||||||||  |||||  ||||||    
1602059 gaacagacaatgaacattgccaatttcatttcgatagactatcacgacaggcatcttcattgtggatttgtcta-caaaatgattacttaacttgtttct 1601961  T
119 tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt 218  Q
    || | |||| |||||| |||||||||||||||||| | ||||||||||| ||| | ||||||||||||||||||  ||||| |||||| |||||||||||    
1601960 tc-gattttctgcatattggtatctttataaattgcttgagctattagctcacgatactccattctcggttgttattgaaaatctagcgtttgagatttt 1601862  T
219 acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc 318  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||| || |||||| ||||||| || ||||||||||| ||||| ||||||||||||    
1601861 acaattgattggaaatctcaaatggtgtttttagggagcatagtggtctgaactcgaacccttcttactcgatcacgagaagtatagcaggatatttgtc 1601762  T
319 gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg 418  Q
    |||||| |||||| |||||| ||| |||||||  ||||| |||| ||||||| || ||||| |||||||||||||||  || ||||||||||| ||| |     
1601761 gagcaaatcgagtgtagtgagaaattcttgacgtaaataaccgatgatattcaaactagagaacaacaagttcttgcggagcaaagaggaatattggctc 1601662  T
419 aatggaacagttctgtggagggatctgaacaagtctt 455  Q
    |||||||  |||||| |||  ||||||||||||||||    
1601661 aatggaatggttctgcggaaagatctgaacaagtctt 1601625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 1601118 - 1601591
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct 118  Q
    |||||| ||||| | ||||| ||||||||||||| ||| ||| |||| | |||| ||| ||||||||||||||||| |||||||||||||||||||||||    
1601118 gaacagacaatgcatattgccaatttcatttcgaaagaatattacaacatgcgtattcattgtggatttgtcttgcgaaatgattgtttaacccgtttct 1601217  T
119 tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt 218  Q
    || | |||| ||||||| ||||||| ||||||||  ||||||||||||| ||| | |||||||| || | | ||  ||||| | |||  |||||||||||    
1601218 tctgtttttctgcatacaggtatctctataaatttctggagctattagctcacgatactccattatcaggttttattgaaaatatagagtttgagatttt 1601317  T
219 acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc 318  Q
    |||||||| ||||||||||||| ||| ||||| ||||||||||||||  || |||||||||||||| ||  |||||||||  ||||  |||||||||||     
1601318 acaattgaatggaaatctcaaacggtgttttgcgggagcatggtggtatgaactcgaagccttcttactctatcacgagatgtatatcaggatatttgtg 1601417  T
319 gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg 418  Q
    ||||||||||||| |||||| |||||||| |  |||||||| || ||||||  || ||||| |||||||||||||||  || | |||||||||| || |     
1601418 gagcaactcgagtgtagtgagaaactcttaatggaaatatctgatgatatttaaactagagaacaacaagttcttgcggagcatagaggaatacgggctc 1601517  T
419 aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaa 492  Q
     ||| ||  |||||  ||||||||||||||||||||| ||| ||  ||||||  ||||||||||| | ||||||    
1601518 gatgaaatggttctacggagggatctgaacaagtcttgagatagcaccttgaatacttggccatgtagaaacaa 1601591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 1622513 - 1622213
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct 118  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||  ||||||||||  |||||||||||||    
1622513 gaacagacaatgaacattgccaatttcatttcgatagactatcacgacaagcgtcttcgttgtggatttgtcta-caaaatgattacttaacccgtttct 1622415  T
119 tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt 218  Q
    || | |||| |||||| ||||||||||||||||||||| |  ||||||| ||||| ||||||||||||| ||||  ||||| |||||| |||||||||||    
1622414 tc-gattttttgcatattggtatctttataaattgttgcaattattagctcacaatactccattctcggatgttattgaaaatctagcgtttgagatttt 1622316  T
219 acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc 318  Q
    ||||||||||||||||||||||||||  ||| ||||||||| |||||  || |||||| ||||||| || ||||||||||| ||||| ||||||||||||    
1622315 acaattgattggaaatctcaaatggtgattttagggagcatagtggtatgaactcgaacccttcttactcgatcacgagaagtatagcaggatatttgtc 1622216  T
319 gag 321  Q
    |||    
1622215 gag 1622213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 1621601 - 1622060
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct 118  Q
    ||||| |||||||| ||||| |||||||||| || ||| ||| |||| | |||||||| |||||||||||||||||  |||||||||||||||| ||| |    
1621601 gaacaagcaatgaatattgccaatttcattttgaaagaatattacaacatgcgtcttcattgtggatttgtcttgcggaatgattgtttaacccattttt 1621700  T
119 tcc-gcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattt 217  Q
    |   | |||| |||||||  |||||| ||||||||  || |||||||||| ||||| ||||     || ||||||  ||||| ||||   ||||||||||    
1621701 ttttgtttttctgcatacaagtatctctataaatttctg-agctattagctcacaatactc-----tcagttgttattgaaaatctaaagtttgagattt 1621794  T
218 tacaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgt 317  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||||  ||  |||||| |||||| || |||| |||||  ||||  |||||||||||    
1621795 tacaattgattggaaatctcagatggtgttttgcgggagcatggtggtatgaaatcgaagtcttcttactcgatcgcgagatgtatatcaggatatttgt 1621894  T
318 cgagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggtt 417  Q
    |||||||||||||| |||||| ||||||||||| |||||||| || ||||||  || ||||| |||||| ||||||||  || | ||||||||| ||| |    
1621895 cgagcaactcgagtgtagtgagaaactcttgacggaaatatctgatgatatttaaactagagaacaacaggttcttgcggagcatagaggaatattggct 1621994  T
418 gaatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatg 483  Q
     |||| ||  |||||  ||| |||||||||||||| || ||| |   |||||| ||||||||||||    
1621995 caatgaaatggttctacggatggatctgaacaagtattgagataacaccttgaacacttggccatg 1622060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 1622206 - 1622103
Alignment:
352 gaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttgaatggaacagttctgtggagggatctgaacaag 451  Q
    |||||| |||| ||||||| || ||||| |||||||||||||||  || ||||||||||||||| | |||||||  |||||| ||| |||||||||||||    
1622206 gaaataaccgatgatattcaaactagagaacaacaagttcttgcggagcaaagaggaatactggctcaatggaatggttctgcggaaggatctgaacaag 1622107  T
452 tctt 455  Q
    ||||    
1622106 tctt 1622103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 29543961 - 29543717
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttct 118  Q
    ||||||| |||||||||| | || ||||| |  | | ||| |||||| | |||||||||||||||||||||||||   ||||||||||||||   |||||    
29543961 gaacaggtaatgaacatttccaacttcatcttcacatactctcacaacatgcgtcttcgttgtggatttgtcttgtggaatgattgtttaacatatttct 29543862  T
119 tccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttt 218  Q
    |  | || |  ||||| |  || |||||  |||||| |||||||||| | || || ||||||||||  ||||||||||||| |||| | |||||||||||    
29543861 ttagtttgtcagcatattattaccttta--aattgtaggagctattacctcataatactccattctatgttgttgatgaaaatctatcttttgagatttt 29543764  T
219 acaattgattggaaatctcaaatggttttttgagggagcatggtggt 265  Q
    ||| ||||||  || ||||||||| |  |||||||||||||||||||    
29543763 acatttgatttaaattctcaaatgatagtttgagggagcatggtggt 29543717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 29543359 - 29543608
Alignment:
19 gaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgt----cttcgttgtggatttgtcttgcaaaatgattgtttaacccgt 114  Q
    ||||| |||||||||||||| |||||||| || ||| ||||||| || || |||    ||| ||||||||| | |||||| || ||||||||||||  ||    
29543359 gaacaagcaatgaacattgccaatttcatctctatatactatcataatagacgtacgtctttgttgtggatatatcttgcgaa-tgattgtttaacatgt 29543457  T
115 ttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgaga 214  Q
    | |||| | || |   |||| |||||||||| |||||||||||| |||||| | || || | | |||||||  ||||| |||||| | ||   ||| |||    
29543458 tgcttctgtttctcaacatattggtatctttgtaaattgttggaactattaactcaaaataattcattctctattgttaatgaaaatataaattttaaga 29543557  T
215 ttttacaattgattggaaatctcaaatggttttttgagggagcatggtggt 265  Q
    |||||||  |||||| |||||| ||||| | ||||||||||||||||||||    
29543558 ttttacatctgattgaaaatctaaaatgttattttgagggagcatggtggt 29543608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 6414402 - 6414366
Alignment:
224 tgattggaaatctcaaatggttttttgagggagcatg 260  Q
    ||||||||||||||||||||| |||||||||||||||    
6414402 tgattggaaatctcaaatggtattttgagggagcatg 6414366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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