View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17954_high_20 (Length: 277)

Name: NF17954_high_20
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17954_high_20
NF17954_high_20
[»] chr2 (1 HSPs)
chr2 (1-259)||(20039637-20039894)
[»] chr1 (1 HSPs)
chr1 (39-259)||(41134130-41134349)
[»] chr5 (2 HSPs)
chr5 (169-259)||(39087088-39087178)
chr5 (61-139)||(39087021-39087099)
[»] chr3 (1 HSPs)
chr3 (137-203)||(40820035-40820100)
[»] scaffold0136 (1 HSPs)
scaffold0136 (148-212)||(21771-21834)
[»] chr8 (1 HSPs)
chr8 (143-195)||(35885780-35885832)
[»] chr4 (1 HSPs)
chr4 (143-195)||(24472275-24472327)
[»] chr6 (1 HSPs)
chr6 (137-212)||(3336970-3337044)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 20039637 - 20039894
Alignment:
Q  1 atgggtttacccaaatttaataatttagcatcctccataaatcataataaaaatcaaaggaaaaatcaacattcaattccaacaacccatgaataaagcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20039637 atgggtttacccaaatttaataatttagcatcctccataaatcataataaaaatcaaaggaaaaatcaacattcaattccaacaactcatgaataaagcg 20039736  T
Q  101 aaatcagtgcaaaaacttgcttgttgaaacctcttgtttctcgtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  20039737 aaatcagtgcaaaaacttgcttgttgaaacctcttgtttctcgtagtttcactttcaaagatacatat-acctcttgtttgaaatttattaaaaataaat 20039835  T
Q  201 gatgaaactgaacatatgaactcattccatcaaatttataggttttccagtcatctcct 259  Q
    ||| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  20039836 gattaaacagaacatatgaactcattccatcaaatttatgggttttccggtcatctcct 20039894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 259
Target Start/End: Original strand, 41134130 - 41134349
Alignment:
Q  39 aaatcataataaaaatcaaaggaaaaatcaacattcaattccaacaacccatgaat-aaagcgaaatcagtgcaaaaacttgcttgttgaaacctcttgt 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||  |||||||||| ||||||    
T  41134130 aaatcatgataaaaatcaaaggaaaaatcaacattcaattccagcaacccatgaatcaaagcaaaatcagtgcaaaaactt--ttgttgaaac-tcttgt 41134226  T
Q  138 ttctcgtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaatga-tgaaactgaacatatgaactcattccatcaaatt 236  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||  ||| | | ||| |||||||||||||  |||||||||||||    
T  41134227 ttcttgtagtttcactttcaaagacacagataacctcttgtttgaaattcattaaaaaagaataattaaaattgaacatatgaaccgattccatcaaatt 41134326  T
Q  237 tataggttttccagtcatctcct 259  Q
    | | ||||||||| |||||||||    
T  41134327 tttgggttttccattcatctcct 41134349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 39087088 - 39087178
Alignment:
Q  169 aacctcttgtttgaaatttattaaaaagaaatgatgaaactgaacatatgaactcattccatcaaatttataggttttccagtcatctcct 259  Q
    |||||||||||||||||||||||||||  |||||| ||||  ||||||||||| ||||||||||||||||| ||||||||| | |||||||    
T  39087088 aacctcttgtttgaaatttattaaaaatgaatgattaaaccaaacatatgaacccattccatcaaatttatgggttttccatttatctcct 39087178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 39087021 - 39087099
Alignment:
Q  61 aaaaatcaacattcaattccaacaacccatgaat-aaagcgaaatcagtgcaaaaacttgcttgttgaaacctcttgttt 139  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||    
T  39087021 aaaaatcaacattcaattcca-caacccatgaatcaaaacgaaatcactgcaaatacttgcttgttgaaacctcttgttt 39087099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 40820035 - 40820100
Alignment:
Q  137 tttctcgtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaatgat 203  Q
    |||||||||| |||||||||||||||||| || |||| |||||||||||| ||||||||| ||||||    
T  40820035 tttctcgtagcttcactttcaaagataca-attaccttttgtttgaaattaattaaaaagcaatgat 40820100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 21771 - 21834
Alignment:
Q  148 ttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaatgatgaaactgaa 212  Q
    |||||||||||||||||| || |||| |||||||||||| ||||||||| |||||| ||||||||    
T  21771 ttcactttcaaagataca-attaccttttgtttgaaattaattaaaaagcaatgattaaactgaa 21834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 35885780 - 35885832
Alignment:
Q  143 gtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaa 195  Q
    ||||||||||||| |||||| || |||||||||||||||||||| ||||||||    
T  35885780 gtagtttcacttttaaagatgcacataacctcttgtttgaaattaattaaaaa 35885832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 24472275 - 24472327
Alignment:
Q  143 gtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaa 195  Q
    ||||||||||||| |||||| || |||||||||||||||||||| ||||||||    
T  24472275 gtagtttcacttttaaagatgcacataacctcttgtttgaaattaattaaaaa 24472327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 3337044 - 3336970
Alignment:
Q  137 tttctcgtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaatgatgaaactgaa 212  Q
    ||||| |||| |||||||||||||||||| || |||| |||||||||||| ||||||||| |||||| ||| ||||    
T  3337044 tttcttgtagcttcactttcaaagataca-attaccttttgtttgaaattaattaaaaagcaatgattaaattgaa 3336970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University