View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17954_high_21 (Length: 265)

Name: NF17954_high_21
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17954_high_21
NF17954_high_21
[»] chr8 (17 HSPs)
chr8 (19-182)||(168107-168285)
chr8 (196-265)||(167880-167949)
chr8 (196-259)||(28207625-28207688)
chr8 (206-255)||(33013056-33013105)
chr8 (207-265)||(27801262-27801320)
chr8 (195-255)||(1135161-1135221)
chr8 (207-259)||(1369901-1369953)
chr8 (207-259)||(4384177-4384229)
chr8 (216-259)||(3146057-3146100)
chr8 (209-259)||(35901945-35901995)
chr8 (216-265)||(5588981-5589030)
chr8 (197-261)||(2250356-2250420)
chr8 (196-259)||(37813444-37813508)
chr8 (206-265)||(12684530-12684589)
chr8 (202-257)||(17081415-17081470)
chr8 (224-257)||(24695776-24695809)
chr8 (228-261)||(42636406-42636439)
[»] chr1 (19 HSPs)
chr1 (196-259)||(7212774-7212837)
chr1 (202-259)||(44329603-44329660)
chr1 (207-259)||(39156273-39156325)
chr1 (206-257)||(38748765-38748816)
chr1 (206-257)||(39914649-39914700)
chr1 (225-259)||(2864172-2864206)
chr1 (219-261)||(43397055-43397097)
chr1 (196-257)||(4851289-4851349)
chr1 (207-259)||(8365515-8365567)
chr1 (205-257)||(26327806-26327858)
chr1 (216-256)||(34232752-34232792)
chr1 (207-259)||(39150594-39150646)
chr1 (196-259)||(47187863-47187926)
chr1 (207-257)||(8794428-8794478)
chr1 (205-259)||(26604974-26605028)
chr1 (196-257)||(32562397-32562458)
chr1 (226-259)||(38491252-38491285)
chr1 (228-265)||(52757432-52757469)
chr1 (207-247)||(8373007-8373047)
[»] chr3 (12 HSPs)
chr3 (208-259)||(48180213-48180264)
chr3 (206-261)||(49362394-49362449)
chr3 (207-248)||(12570934-12570975)
chr3 (207-248)||(13547398-13547439)
chr3 (213-265)||(26900059-26900112)
chr3 (216-265)||(22730522-22730571)
chr3 (216-261)||(26143091-26143136)
chr3 (206-259)||(45988267-45988320)
chr3 (207-257)||(52638202-52638252)
chr3 (224-257)||(16663006-16663039)
chr3 (216-261)||(29083940-29083985)
chr3 (207-247)||(52249338-52249378)
[»] chr4 (20 HSPs)
chr4 (209-259)||(31429291-31429341)
chr4 (196-257)||(50426990-50427051)
chr4 (206-259)||(50341909-50341962)
chr4 (196-259)||(7444427-7444491)
chr4 (207-259)||(51834926-51834978)
chr4 (196-259)||(8297872-8297935)
chr4 (196-259)||(20394639-20394702)
chr4 (207-261)||(49400624-49400678)
chr4 (206-259)||(35777741-35777794)
chr4 (216-261)||(41462070-41462115)
chr4 (205-257)||(37138206-37138258)
chr4 (207-259)||(45900191-45900243)
chr4 (207-255)||(49084447-49084495)
chr4 (207-261)||(7852584-7852638)
chr4 (207-257)||(25115307-25115357)
chr4 (228-265)||(18089651-18089688)
chr4 (228-257)||(47040789-47040818)
chr4 (208-265)||(48337569-48337626)
chr4 (206-259)||(51736365-51736418)
chr4 (207-255)||(37440838-37440886)
[»] chr2 (9 HSPs)
chr2 (207-261)||(19890229-19890283)
chr2 (196-259)||(1334926-1334989)
chr2 (205-257)||(41933141-41933193)
chr2 (196-249)||(34904840-34904893)
chr2 (196-259)||(14295629-14295692)
chr2 (216-255)||(20064932-20064971)
chr2 (224-259)||(29239291-29239326)
chr2 (216-259)||(31452388-31452431)
chr2 (207-261)||(37993090-37993144)
[»] chr6 (13 HSPs)
chr6 (207-259)||(1840995-1841047)
chr6 (196-259)||(1371206-1371269)
chr6 (196-259)||(1378954-1379017)
chr6 (224-259)||(31855083-31855118)
chr6 (198-255)||(23399113-23399170)
chr6 (207-255)||(2692476-2692524)
chr6 (207-259)||(17215725-17215777)
chr6 (209-249)||(26669331-26669371)
chr6 (207-254)||(11720925-11720972)
chr6 (207-257)||(19293497-19293547)
chr6 (196-249)||(3766278-3766331)
chr6 (225-261)||(7421702-7421738)
chr6 (211-259)||(32823693-32823741)
[»] chr7 (20 HSPs)
chr7 (196-259)||(21727448-21727511)
chr7 (196-259)||(27123275-27123338)
chr7 (206-257)||(35731298-35731349)
chr7 (206-255)||(39321028-39321077)
chr7 (206-257)||(3692888-3692939)
chr7 (216-259)||(28663181-28663224)
chr7 (216-259)||(28770498-28770541)
chr7 (219-265)||(35496609-35496655)
chr7 (202-250)||(26197545-26197593)
chr7 (207-255)||(44592878-44592926)
chr7 (196-259)||(22618739-22618802)
chr7 (224-255)||(47778600-47778631)
chr7 (223-265)||(7653604-7653646)
chr7 (207-261)||(25886182-25886236)
chr7 (207-257)||(37158400-37158450)
chr7 (217-255)||(43224133-43224171)
chr7 (202-259)||(27337704-27337761)
chr7 (216-261)||(42936028-42936072)
chr7 (209-249)||(3719219-3719259)
chr7 (216-252)||(44537362-44537398)
[»] chr5 (13 HSPs)
chr5 (196-259)||(16667334-16667397)
chr5 (207-261)||(3140826-3140880)
chr5 (209-254)||(7719218-7719263)
chr5 (206-255)||(15720078-15720127)
chr5 (196-259)||(18229644-18229707)
chr5 (196-259)||(30501182-30501245)
chr5 (196-259)||(30541525-30541588)
chr5 (207-265)||(8208191-8208249)
chr5 (196-261)||(2918637-2918702)
chr5 (224-259)||(30104833-30104868)
chr5 (216-261)||(34899176-34899221)
chr5 (207-259)||(8221134-8221186)
chr5 (216-260)||(39558808-39558852)
[»] scaffold0036 (1 HSPs)
scaffold0036 (196-259)||(62567-62630)
[»] scaffold1444 (2 HSPs)
scaffold1444 (223-259)||(1746-1782)
scaffold1444 (223-255)||(978-1010)
[»] scaffold0119 (1 HSPs)
scaffold0119 (209-249)||(1422-1462)
[»] scaffold0204 (1 HSPs)
scaffold0204 (208-265)||(25091-25148)
[»] scaffold0111 (1 HSPs)
scaffold0111 (223-256)||(38154-38187)
[»] scaffold0268 (1 HSPs)
scaffold0268 (223-259)||(20290-20326)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 168285 - 168107
Alignment:
Q  19 attcatacaatttaggtcacatggacgcccttaaccctaacttgg---------------aacagaagaaaaaggacaggcaattagcttttccatttaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  168285 attcatacaatttaggtcacatggacgcccttaaccctaacttggcatttaaagagaaggaacagaagaaaaaggacaggcaattagcttttccatttaa 168186  T
Q  104 agagtagttgaattgcatgcactgttgtgcgtagctttatgcatgggtgtgattatgatatgatgctttaggacaaatc 182  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  168185 agagtagttgaattgcatgcactgttgtgcgtacctttatgcatgggtgtgattatgatatgatgctttaggacaaatc 168107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 167949 - 167880
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  167949 ttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatttattac 167880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 28207625 - 28207688
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||    
T  28207625 ttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcatt 28207688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 33013056 - 33013105
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  33013056 caaatttaacaattattcttttaaaaagtcaactattacaatttccaatg 33013105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 27801320 - 27801262
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||||||  |||||| ||||||||||||||||||||||||||| ||||||||| |||||    
T  27801320 aaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattac 27801262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 1135161 - 1135221
Alignment:
Q  195 attaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    |||||| ||||| ||||||  |||||| ||||||||||||||||||||||||||| |||||    
T  1135161 attaagcatctcgaatttagtaattattcttttaaaaagtcaactattacaattttcaatg 1135221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 1369953 - 1369901
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  |||||| ||||||||||||||||||| |||||||||||||||||    
T  1369953 aaatttagcaattattcttttaaaaagtcaactatcacaatttccaatgcatt 1369901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 4384229 - 4384177
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  |||||| |||||||||| ||||||||||||||||||||||||||    
T  4384229 aaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcatt 4384177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 3146057 - 3146100
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  3146057 aattattcttttaaaaagttaactattacaatttccaatgcatt 3146100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 35901945 - 35901995
Alignment:
Q  209 atttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||| ||||||  |||||||||||||| |||||||||||||||||||||    
T  35901945 atttaataattatttttttaaaaagtcaattattacaatttccaatgcatt 35901995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 5588981 - 5589030
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||| |||||    
T  5588981 aattattcttttaaaaagtcaactattataattttcaatgcattaattac 5589030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 2250356 - 2250420
Alignment:
Q  197 taagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||| ||| ||||||||| |||||| |||||||||||||||| |||| ||||| ||||| |||||    
T  2250356 taagcatcccaaatttaataattattcttttaaaaagtcaaccattataattttcaatgtattta 2250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 37813508 - 37813444
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaa-gtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| |||||||||| |||||| ||||||||||||||||||||    
T  37813508 ttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcatt 37813444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 12684589 - 12684530
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    ||||||||| |||||| |||| ||| | ||||||||||||||||| |||||||| |||||    
T  12684589 caaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattac 12684530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 17081470 - 17081415
Alignment:
Q  202 atctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||||||  ||||||  ||| ||||||||||||||||||||||| ||||||    
T  17081470 atctcaaatttagcaattattttttaaaaaagtcaactattacaatttctaatgca 17081415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 24695776 - 24695809
Alignment:
Q  224 ttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||||||||||||||||||||| ||||||    
T  24695776 ttttaaaaagtcaactattacaatttctaatgca 24695809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 42636439 - 42636406
Alignment:
Q  228 aaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||||||||||||||||||| |||||||||||    
T  42636439 aaaaagtcaactattacaatttacaatgcattta 42636406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 7212774 - 7212837
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||||||||||||    
T  7212774 ttaagtatctcaaatttagtaattatacttttaaaaagttaacaattacaatttccaatgcatt 7212837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 44329603 - 44329660
Alignment:
Q  202 atctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||| |||||| |||||| ||||||||||||||||||||| ||||| |||||||||    
T  44329603 atctcatatttaataattattcttttaaaaagtcaactattataattttcaatgcatt 44329660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 39156273 - 39156325
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  |||||| |||||||||||||||||| ||||||||||||||||||    
T  39156273 aaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcatt 39156325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 38748816 - 38748765
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||| |||||||    
T  38748816 caaatttagaaattattcttttaaaaagtcaactattataattttcaatgca 38748765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 39914700 - 39914649
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||| |||| | ||||||||||||||||||||||||||| |||||||    
T  39914700 caaatttaacaattgttcttttaaaaagtcaactattacaattttcaatgca 39914649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 2864172 - 2864206
Alignment:
Q  225 tttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||||||||||||||||||||||||||||||    
T  2864172 tttaaaaagtcaactattacaatttccaatgcatt 2864206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 43397097 - 43397055
Alignment:
Q  219 tatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  43397097 tatatttttaaaaagtcaactattataatttccaatgcattta 43397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 4851349 - 4851289
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||| || |||| |||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  4851349 ttaagcatgtcaattttaaaaattattcttt-aaaaagtcaactattacaatttcaaatgca 4851289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 8365515 - 8365567
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||| |||||| |||||||||| |||||||||||||| | |||||||||    
T  8365515 aaatttaataattattcttttaaaaaatcaactattacaatcttcaatgcatt 8365567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 26327806 - 26327858
Alignment:
Q  205 tcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||||||||||| |||| ||||| | |||||||||||||| |||||||    
T  26327806 tcaaatttaaaaattattctttaaaaaactaaactattacaattttcaatgca 26327858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 34232792 - 34232752
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgc 256  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  34232792 aattattcttttaaaaagtcaactattacaattttcaatgc 34232752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 39150594 - 39150646
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  |||||| ||| ||||||||||||||||||||||| |||||||||    
T  39150594 aaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcatt 39150646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 47187926 - 47187863
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| | |||||||| |||||||||| |||||||||||||||    
T  47187926 ttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcatt 47187863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 8794428 - 8794478
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||  |||||| ||||||||||||||||||||| ||||| |||||||    
T  8794428 aaatttagtaattattcttttaaaaagtcaactattataattttcaatgca 8794478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 26605028 - 26604974
Alignment:
Q  205 tcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||||||||||| |||||||||||| || |||||||| || |||| ||||    
T  26605028 tcaaatttaaaaattattcttttaaaaagtaaattattacaaatttcaatacatt 26604974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 32562458 - 32562397
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||| |||| |||||||  ||||||  ||||||||| |||||||||||||||| |||||||    
T  32562458 ttaagaatctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgca 32562397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 38491252 - 38491285
Alignment:
Q  226 ttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||||||||||||||||||| |||||||||    
T  38491252 ttaaaaagtcaactattacaatttacaatgcatt 38491285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 52757432 - 52757469
Alignment:
Q  228 aaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  52757432 aaaaagtcaaatatttcaatttccaatgcatttattac 52757469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 8373007 - 8373047
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaat 247  Q
    |||||||| |||||| |||||||||| ||||||||||||||    
T  8373007 aaatttaataattattcttttaaaaaatcaactattacaat 8373047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 48180264 - 48180213
Alignment:
Q  208 aatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  48180264 aatttaacaattattcttttaaaaagtcaactattacaatttccaatgcatt 48180213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 49362449 - 49362394
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||    
T  49362449 caaatttaataattattcttttaaaaagttaactattacaatttccaatgtattta 49362394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 12570975 - 12570934
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatt 248  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  12570975 aaatttaacaattatacttttaaaaagtcaactattacaatt 12570934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 13547439 - 13547398
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatt 248  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  13547439 aaatttaacaattatacttttaaaaagtcaactattacaatt 13547398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 26900112 - 26900059
Alignment:
Q  213 aaaaattatacttttaaaaa-gtcaactattacaatttccaatgcatttattac 265  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  26900112 aaaaattattcttttaaaaaagtcaactattacaattttcaatgcatttattac 26900059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 22730571 - 22730522
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||| |||||    
T  22730571 aattattcttttaaaaagtcaactattataattttcaatgcattaattac 22730522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 26143091 - 26143136
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||    
T  26143091 aattattcttttaaaaagtcaactattacaattttgaatgcattta 26143136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 45988320 - 45988267
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||| | |||||| |||||||||| ||||||||||||||||| ||||||||    
T  45988320 caaatttgacaattattcttttaaaaaatcaactattacaatttctaatgcatt 45988267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 52638252 - 52638202
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||  ||||||  |||||||||| |||||||||||||||||||||||    
T  52638252 aaatttagtaattattattttaaaaagccaactattacaatttccaatgca 52638202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 16663006 - 16663039
Alignment:
Q  224 ttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||||||||||||||||||| ||||||||    
T  16663006 ttttaaaaagtcaactattacaattaccaatgca 16663039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 29083985 - 29083940
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||| |||||||||||| ||||||||||||||  ||||||||||    
T  29083985 aattattcttttaaaaagttaactattacaatttttaatgcattta 29083940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 52249338 - 52249378
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaat 247  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  52249338 aaatttaataattattcttttaaaaagttaactattacaat 52249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 31429291 - 31429341
Alignment:
Q  209 atttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  31429291 atttaaaaattattcttttaaaaaatcaactattacaatttccaatgcatt 31429341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 50426990 - 50427051
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||| ||||||||||||  |||||| ||||| |||||||||||||||||||||||||||||    
T  50426990 ttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgca 50427051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 50341962 - 50341909
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||| |||||    
T  50341962 caaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcatt 50341909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 7444491 - 7444427
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaa-gtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||||    
T  7444491 ttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcatt 7444427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 51834926 - 51834978
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  51834926 aaatttagcaattattcttttaaaaagtcaactattataatttccaatgcatt 51834978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 8297872 - 8297935
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| ||||||||| ||||||| |||||||||||||||||||    
T  8297872 ttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcatt 8297935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 20394639 - 20394702
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| |||||||||||| ||||||||||||||||||| ||||    
T  20394639 ttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacatt 20394702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 49400624 - 49400678
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||||  |||||| |||||||||| |||||||||||||||||||||| |||||    
T  49400624 aaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtattta 49400678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 35777794 - 35777741
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||  |||||| |||||||||||| ||||||||||||||| ||||||||    
T  35777794 caaatttagtaattattcttttaaaaagttaactattacaatttctaatgcatt 35777741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 41462070 - 41462115
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||| ||||||||||||||||||||||||||||  |||||||||    
T  41462070 aattattcttttaaaaagtcaactattacaatttcttatgcattta 41462115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 37138258 - 37138206
Alignment:
Q  205 tcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||||  || ||| ||||||||||||||||||||| |||||||||||||    
T  37138258 tcaaatttagcaactattcttttaaaaagtcaactattataatttccaatgca 37138206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 45900243 - 45900191
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  |||||| |||||| |||||||||||| |||||||||||||||||    
T  45900243 aaatttagcaattattcttttataaagtcaactatcacaatttccaatgcatt 45900191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 49084495 - 49084447
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    |||||||  |||||| ||||||||||||||||||||||||||| |||||    
T  49084495 aaatttagtaattattcttttaaaaagtcaactattacaattttcaatg 49084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 7852638 - 7852584
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||||  |||||| |||||||||| | |||||||||||||| |||||||||||    
T  7852638 aaatttagtaattattcttttaaaaaattaactattacaattttcaatgcattta 7852584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 25115357 - 25115307
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||  ||||||  ||||||||||| ||||||||||||||||||||||    
T  25115357 aaatttagtaattattattttaaaaagttaactattacaatttccaatgca 25115307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 18089651 - 18089688
Alignment:
Q  228 aaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  18089651 aaaaagtcaaatatttcaatttccaatgcatttattac 18089688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 47040818 - 47040789
Alignment:
Q  228 aaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||||||||||||||||||||||||    
T  47040818 aaaaagtcaactattacaatttccaatgca 47040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 48337569 - 48337626
Alignment:
Q  208 aatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    ||||||| ||||||   |||||||| |||||||||||||||| ||||||||| |||||    
T  48337569 aatttaacaattatttctttaaaaaatcaactattacaattttcaatgcattgattac 48337626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 51736365 - 51736418
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||  |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  51736365 caaatttagcaattattcttttaaaaagtcaactattataattttcaatacatt 51736418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 37440838 - 37440886
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    |||||||  ||||||  |||||||||||||||||||||||||| |||||    
T  37440838 aaatttagtaattattattttaaaaagtcaactattacaattttcaatg 37440886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 19890283 - 19890229
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  19890283 aaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcattta 19890229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 1334989 - 1334926
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||    
T  1334989 ttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcatt 1334926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 41933141 - 41933193
Alignment:
Q  205 tcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||||  |||||| ||||||||||||||||||||||||||| |||||||    
T  41933141 tcaaatttagcaattattcttttaaaaagtcaactattacaattttcaatgca 41933193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 34904893 - 34904840
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaattt 249  Q
    |||||||||||| |||||  |||||| |||||||||| ||||||||||||||||    
T  34904893 ttaagtatctcatatttagtaattattcttttaaaaaatcaactattacaattt 34904840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 14295629 - 14295692
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| ||||||||| || |||||||||||||| |||||||||    
T  14295629 ttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgcatt 14295692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 20064932 - 20064971
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  20064932 aattattcttttaaaaagtcaactattacaattttcaatg 20064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 29239326 - 29239291
Alignment:
Q  224 ttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||||||||||||||||||||| |||||||||    
T  29239326 ttttaaaaagtcaactattacaattttcaatgcatt 29239291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 31452431 - 31452388
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||| |||||||||||||||| |||||||||| |||||||||    
T  31452431 aattattcttttaaaaagtcaacaattacaattttcaatgcatt 31452388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 37993090 - 37993144
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||||| || ||| |||| ||||| |||||||||||||||| |||||||||||    
T  37993090 aaatttaataactattctttcaaaaaatcaactattacaattttcaatgcattta 37993144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 1840995 - 1841047
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  1840995 aaatttaataattattcttttaaaaaatcaactattacaatttccaatgcatt 1841047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 1371269 - 1371206
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||| |||||||||| |||||| |||||||||||||||||   ||||||| |||||||||    
T  1371269 ttaagtatttcaaatttaataattattcttttaaaaagtcaacttccacaattttcaatgcatt 1371206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 1379017 - 1378954
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||| |||||||||| |||||| |||||||||||||||||   ||||||| |||||||||    
T  1379017 ttaagtatttcaaatttaataattattcttttaaaaagtcaacttccacaattttcaatgcatt 1378954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 31855083 - 31855118
Alignment:
Q  224 ttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||||||||||||||||||||||||||||||    
T  31855083 ttttaaaaagtcaactattacaatttccaatgcatt 31855118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 23399113 - 23399170
Alignment:
Q  198 aagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    |||||||| ||||||| ||||||| |||||||||||| |||||||| ||||| |||||    
T  23399113 aagtatcttaaatttagaaattattcttttaaaaagttaactattataattttcaatg 23399170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 2692524 - 2692476
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    |||||||  ||||||  ||||||||||||||||||||||||||||||||    
T  2692524 aaatttagtaattattattttaaaaagtcaactattacaatttccaatg 2692476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 17215777 - 17215725
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  17215777 aaatttagtaattatttttttaaaaagtcaactattacaattttcaatgcatt 17215725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 26669371 - 26669331
Alignment:
Q  209 atttaaaaattatacttttaaaaagtcaactattacaattt 249  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  26669371 atttaataattattcttttaaaaagtcaactattacaattt 26669331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 11720972 - 11720925
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaat 254  Q
    |||||||| |||||| ||||||| ||||||||||||||||||| ||||    
T  11720972 aaatttaacaattattcttttaagaagtcaactattacaattttcaat 11720925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 19293547 - 19293497
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||| ||||||  ||||||||||| |||||||||||||||| |||||    
T  19293547 aaatttaacaattattattttaaaaagttaactattacaatttccgatgca 19293497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 3766278 - 3766331
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaattt 249  Q
    ||||| ||| |||||||  ||||||| ||||||||||||||| |||||||||||    
T  3766278 ttaagcatcccaaatttggaaattattcttttaaaaagtcaattattacaattt 3766331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 7421702 - 7421738
Alignment:
Q  225 tttaaaaagtcaactattacaatttccaatgcattta 261  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  7421702 tttaaaaagtcaaatattacaattttcaatgcattta 7421738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 32823693 - 32823741
Alignment:
Q  211 ttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||| |||||| ||||| ||||||||| ||||||||||| |||||||||    
T  32823693 ttaataattattcttttgaaaagtcaattattacaattttcaatgcatt 32823741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 21727511 - 21727448
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||||| ||||||  |||||| |||||||||||||||||||||||||||||||| ||||    
T  21727511 ttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaatttccaatacatt 21727448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 27123275 - 27123338
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  ||| || |||||||||||||||||||||||||||||||||||||    
T  27123275 ttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcatt 27123338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 35731298 - 35731349
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  35731298 caaatttaacaactattcttttaaaaagtcaactattacaatttccaatgca 35731349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 39321077 - 39321028
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  39321077 caaatttaacaattattcttttaaaaagtcaactattacaattttcaatg 39321028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 3692888 - 3692939
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    ||||||||  |||||| |||||||||| ||||||||||||||||||||||||    
T  3692888 caaatttagcaattattcttttaaaaaatcaactattacaatttccaatgca 3692939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 28663224 - 28663181
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  28663224 aattattcttttaaaaagtcaactattacaattttcaatgcatt 28663181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 28770498 - 28770541
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  28770498 aattattcttttgaaaagtcaactattacaatttccaatgcatt 28770541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 35496655 - 35496609
Alignment:
Q  219 tatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  35496655 tatatttttaaaaagtcaactattacaattttcaatgcattcattac 35496609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 26197545 - 26197593
Alignment:
Q  202 atctcaaatttaaaaattatacttttaaaaagtcaactattacaatttc 250  Q
    |||||||||||||||| ||| | |||||||| |||||||||||||||||    
T  26197545 atctcaaatttaaaaactattcctttaaaaattcaactattacaatttc 26197593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 44592878 - 44592926
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    |||||||| |||||| |||||||||||| |||||||||||||| |||||    
T  44592878 aaatttaataattattcttttaaaaagttaactattacaattttcaatg 44592926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 22618802 - 22618739
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||||||||||   || |||| ||||||||||||||||| |||||||||    
T  22618802 ttaaggatcccaaatttaaaaattatttcttcaaaatgtcaactattacaattttcaatgcatt 22618739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 47778631 - 47778600
Alignment:
Q  224 ttttaaaaagtcaactattacaatttccaatg 255  Q
    ||||||||||||||||||||||||||||||||    
T  47778631 ttttaaaaagtcaactattacaatttccaatg 47778600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 7653604 - 7653646
Alignment:
Q  223 cttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    ||||||||||||||||||||| |||||||||| |||| |||||    
T  7653604 cttttaaaaagtcaactattataatttccaattcattcattac 7653646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 25886182 - 25886236
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    ||||||| ||||||| || ||| |||||||||||||||||||| |||| ||||||    
T  25886182 aaatttagaaattattctcttagaaagtcaactattacaattttcaatacattta 25886236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 37158450 - 37158400
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgca 257  Q
    |||||||  ||||||  |||||||||||||||||||||||||| |||||||    
T  37158450 aaatttagtaattattattttaaaaagtcaactattacaattttcaatgca 37158400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 43224171 - 43224133
Alignment:
Q  217 attatacttttaaaaagtcaactattacaatttccaatg 255  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  43224171 attattcttttaaaaagtcaactgttacaatttccaatg 43224133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 27337704 - 27337761
Alignment:
Q  202 atctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||||||| |||||| |||| ||||| |||||||||||| ||| |||| ||||    
T  27337704 atctcaaatttaacaattattctttaaaaaaatcaactattacagtttacaatacatt 27337761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 42936028 - 42936072
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||| |||||||||| |||||||||||||||| |||||||||||    
T  42936028 aattattcttttaaaaaatcaactattacaattt-caatgcattta 42936072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 3719219 - 3719259
Alignment:
Q  209 atttaaaaattatacttttaaaaagtcaactattacaattt 249  Q
    ||||| |||||||  ||||||||||||||||||||||||||    
T  3719219 atttataaattattgttttaaaaagtcaactattacaattt 3719259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 44537362 - 44537398
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttcca 252  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  44537362 aattattcttttaaaaagtcaactattataatttcca 44537398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 16667397 - 16667334
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||| |||||| ||||||||||||||| |||||||||||||||| ||||    
T  16667397 ttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacatt 16667334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 3140826 - 3140880
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||    
T  3140826 aaatttaataattattcttttaaaaagtcaactattacaattttcaattcattta 3140880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 7719218 - 7719263
Alignment:
Q  209 atttaaaaattatacttttaaaaagtcaactattacaatttccaat 254  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||    
T  7719218 atttaaaaattattcttttaaaaaatcaactattacaatttccaat 7719263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 15720078 - 15720127
Alignment:
Q  206 caaatttaaaaattatacttttaaaaagtcaactattacaatttccaatg 255  Q
    ||||||||  |||||| |||||||||||||||||||||||||||||||||    
T  15720078 caaatttatcaattattcttttaaaaagtcaactattacaatttccaatg 15720127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 18229707 - 18229644
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| |||||||||||| ||||||||||||||||||| ||||    
T  18229707 ttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacatt 18229644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 30501245 - 30501182
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| ||||||||||||||| |||||||||||||||| ||||    
T  30501245 ttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacatt 30501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 30541588 - 30541525
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| ||| ||||||||  |||||| ||||||||||||||| |||||||||||||||| ||||    
T  30541588 ttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacatt 30541525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 8208191 - 8208249
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    |||||| |||||||| ||||||||||||||| |||||||||||  |||||||| |||||    
T  8208191 aaatttgaaaattattcttttaaaaagtcaattattacaatttttaatgcattcattac 8208249  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 2918702 - 2918637
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    ||||| || |||||||||| ||||||  ||| |||| ||||||||||| |||||||||||||||||    
T  2918702 ttaagcatttcaaatttaataattattttttaaaaatgtcaactattataatttccaatgcattta 2918637  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 30104833 - 30104868
Alignment:
Q  224 ttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30104833 ttttaaaaagtcaacaattacaatttccaatgcatt 30104868  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 34899221 - 34899176
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcattta 261  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||    
T  34899221 aattattcttttaaaaagacaattattacaatttctaatgcattta 34899176  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 8221134 - 8221186
Alignment:
Q  207 aaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||  |||||| || ||||||||||||||||||||| || |||||||||    
T  8221134 aaatttagcaattattctcttaaaaagtcaactattacaactttcaatgcatt 8221186  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 39558852 - 39558808
Alignment:
Q  216 aattatacttttaaaaagtcaactattacaatttccaatgcattt 260  Q
    |||||| | |||||||| |||||| ||||||||||||||||||||    
T  39558852 aattattcatttaaaaattcaactgttacaatttccaatgcattt 39558808  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 62630 - 62567
Alignment:
Q  196 ttaagtatctcaaatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||| |||||| |||||  |||||| |||||||||||||||||||||| |||| |||||||||    
T  62630 ttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcatt 62567  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 1782 - 1746
Alignment:
Q  223 cttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1782 cttttaaaaagccaactattacaatttccaatgcatt 1746  T

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Target: scaffold1444; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 1010 - 978
Alignment:
Q  223 cttttaaaaagtcaactattacaatttccaatg 255  Q
    ||||||||||||||||||||||||||| |||||    
T  1010 cttttaaaaagtcaactattacaattttcaatg 978  T

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Target: scaffold0119 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 1422 - 1462
Alignment:
Q  209 atttaaaaattatacttttaaaaagtcaactattacaattt 249  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  1422 atttaataattattcttttaaaaagtcaactattacaattt 1462  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 25091 - 25148
Alignment:
Q  208 aatttaaaaattatacttttaaaaagtcaactattacaatttccaatgcatttattac 265  Q
    ||||||| ||||||   |||||||| |||||||||||||||| ||||||||| |||||    
T  25091 aatttaacaattatttctttaaaaaatcaactattacaattttcaatgcattgattac 25148  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 38154 - 38187
Alignment:
Q  223 cttttaaaaagtcaactattacaatttccaatgc 256  Q
    |||||||||||||||||||||||||||| |||||    
T  38154 cttttaaaaagtcaactattacaatttctaatgc 38187  T

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Target: scaffold0268 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 20326 - 20290
Alignment:
Q  223 cttttaaaaagtcaactattacaatttccaatgcatt 259  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  20326 cttttaaaaagttaactattacaatttcaaatgcatt 20290  T

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