View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17954_high_5 (Length: 505)

Name: NF17954_high_5
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17954_high_5
NF17954_high_5
[»] chr4 (4 HSPs)
chr4 (271-479)||(30462036-30462244)
chr4 (18-142)||(30462322-30462446)
chr4 (369-417)||(7391684-7391732)
chr4 (369-426)||(26088642-26088699)
[»] chr7 (1 HSPs)
chr7 (369-417)||(21081775-21081823)
[»] chr5 (1 HSPs)
chr5 (369-414)||(25536688-25536733)
[»] chr8 (2 HSPs)
chr8 (370-409)||(9186741-9186780)
chr8 (370-409)||(9186988-9187027)
[»] chr6 (1 HSPs)
chr6 (350-396)||(29350368-29350414)
[»] chr3 (1 HSPs)
chr3 (387-444)||(20838268-20838325)
[»] scaffold0457 (1 HSPs)
scaffold0457 (360-412)||(1528-1580)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 271 - 479
Target Start/End: Complemental strand, 30462244 - 30462036
Alignment:
Q  271 tggtacctaccaattcacaaacatatcgtactcctacaatatctatcattttttggagcattcatttatttcccttatgccttcatgatttaagaaacgt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  30462244 tggtacctaccaattcacaaacatatcgtactcctacaatatctatcgttttttggagcattcatttatttcccttattccttcgtcatttaagaaacgt 30462145  T
Q  371 aacaaactagatcgagtatatctatacaatatataaagaaaatataaaaatttgggtgtacttttacattatcctagttataccctaaaaacataaaatt 470  Q
    || ||| |||||| ||||||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  30462144 aataaattagatcaagtatatctataccatatataaaggaaatataaaattttgggggtatttttacattatcccagttataccctaaaaacataaaatt 30462045  T
Q  471 tagcgtata 479  Q
    |||||||||    
T  30462044 tagcgtata 30462036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 30462446 - 30462322
Alignment:
Q  18 catggtagtctaagtatgaactagacaaatgtcttgtgttgcttcaactcattttgacttgaaatcgaagtcatcgaatctctaacatacatgcatatat 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30462446 catggtagtctaagtatgaaatagacaaatgtcttgtgttgcttcaactcattttgacttgaaatcaaagtcatcgaatctctaacatacatgcatatat 30462347  T
Q  118 gaagacataatgatattatattata 142  Q
    |||||||||||||||||||||||||    
T  30462346 gaagacataatgatattatattata 30462322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 7391732 - 7391684
Alignment:
Q  369 gtaacaaactagatcgagtatatctatacaatatataaagaaaatataa 417  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||||||    
T  7391732 gtaacaaactagatcgggtatatttatactatatataaagaaaatataa 7391684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 426
Target Start/End: Original strand, 26088642 - 26088699
Alignment:
Q  369 gtaacaaactagatcgagtatatctatacaatatataaagaaaatataaaaatttggg 426  Q
    |||||||| |||||||| |||||| |||| ||||||||||||||||||| | ||||||    
T  26088642 gtaacaaattagatcgaatatatccatactatatataaagaaaatataagattttggg 26088699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 21081823 - 21081775
Alignment:
Q  369 gtaacaaactagatcgagtatatctatacaatatataaagaaaatataa 417  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||||||    
T  21081823 gtaacaaactagatcgagtatttctatactatatataatgaaaatataa 21081775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 25536688 - 25536733
Alignment:
Q  369 gtaacaaactagatcgagtatatctatacaatatataaagaaaata 414  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  25536688 gtaacaaactagatcaagtatatttatactatatataaagaaaata 25536733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 409
Target Start/End: Complemental strand, 9186780 - 9186741
Alignment:
Q  370 taacaaactagatcgagtatatctatacaatatataaaga 409  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  9186780 taacaaactagatagagtatatctatactatatataaaga 9186741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 409
Target Start/End: Complemental strand, 9187027 - 9186988
Alignment:
Q  370 taacaaactagatcgagtatatctatacaatatataaaga 409  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  9187027 taacaaactagatagagtatatctatactatatataaaga 9186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 29350368 - 29350414
Alignment:
Q  350 ccttcatgatttaagaaacgtaacaaactagatcgagtatatctata 396  Q
    |||| ||| ||||| |||||||| |||||||||||||||||||||||    
T  29350368 ccttaatgctttaaaaaacgtaataaactagatcgagtatatctata 29350414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 20838268 - 20838325
Alignment:
Q  387 tatatctatacaatatataaagaaaatataaaaatttgggtgtacttttacattatcc 444  Q
    ||||| ||||| ||||||||||||||||||| | |||||||  |||||| ||||||||    
T  20838268 tatatttatactatatataaagaaaatataacattttgggttgactttttcattatcc 20838325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 1528 - 1580
Alignment:
Q  360 ttaagaaacgtaacaaactagatcgagtatatctatacaatatataaagaaaa 412  Q
    |||| ||| ||||||||||||||  | ||||||||||| ||||||||||||||    
T  1528 ttaaaaaatgtaacaaactagattaaatatatctatactatatataaagaaaa 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University