View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17954_high_7 (Length: 463)
Name: NF17954_high_7
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 52762168 - 52761935
Alignment:
| Q |
9 |
cagaacctgtgcaacttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattcaaagatgt |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52762168 |
cagaacctatgcaacttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattcaaagatgt |
52762069 |
T |
|
| Q |
109 |
atgaatcctttaattaccaatctttgtcctttctcactttgcattcttgatgacgcttcggactacattttccataatgttgagatgttcttcatctatc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52762068 |
atgaatcctttaattaccaatctttgtcc-ttctcactttgtattctttatgacgcttcggactacattttccataatgttgagatgttcttcatctatc |
52761970 |
T |
|
| Q |
209 |
tgaattagcattatttatatactacattgataaat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52761969 |
tgaattagcattatttatatactacattgataaat |
52761935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 238 - 455
Target Start/End: Original strand, 52761952 - 52762168
Alignment:
| Q |
238 |
ataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcatcaagaatgcaaagtgagaaaggacaaagatt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
52761952 |
ataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcataaagaatacaaagtgagaa-ggacaaagatt |
52762050 |
T |
|
| Q |
338 |
ggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaattgaa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52762051 |
ggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaattgaa |
52762150 |
T |
|
| Q |
438 |
caagttgcacaggttctg |
455 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
52762151 |
caagttgcataggttctg |
52762168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University