View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17954_low_1 (Length: 943)
Name: NF17954_low_1
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_1 |
 | |
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| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 849; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 19 - 943
Target Start/End: Complemental strand, 40087617 - 40086693
Alignment:
| Q |
19 |
actttggactaacaaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
40087617 |
actttggactaacaaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatgaatcacacttttttagtaactctattcaattaaact |
40087518 |
T |
|
| Q |
119 |
atctattttgattgagataattgtgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40087517 |
atctattttgattgagataattgtgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctgg |
40087418 |
T |
|
| Q |
219 |
taagatgctaacagaccatgcaggcaggtgatatgaattgccactgaaatttacagttttatcagatttggcgtccacattggcgagaaaggcaacacat |
318 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
40087417 |
caagatgctcacagaccatgcaggcaagtgatatgaattgccactgaaatttacggttttatcagatttggcgtccacattggcgagaaaggcagcacat |
40087318 |
T |
|
| Q |
319 |
acagatcctgtcttataaacggccgcctgcggtttaattagtaaaagactattaatgccgggaatttttcaaagaaagaatcttacacgattgacaaacc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40087317 |
acagatcctgtcttataaacggccgcctgcggttttattagtaaaagactattaatgccgggaatttttcaaagaaagaatcttacactattgacaaacc |
40087218 |
T |
|
| Q |
419 |
agatgagttttagttacaaaatatattatatcctaagacacggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctatacctctaggtt |
518 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40087217 |
agatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctatacctctaggtt |
40087118 |
T |
|
| Q |
519 |
tggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccccacttcggctgc |
618 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40087117 |
tggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccccacttcggctgc |
40087018 |
T |
|
| Q |
619 |
ctaataactcctgcagcatgtagcgaagatatcaaaaaatccaatcgtccagtgtaatttctcttctatatacaagaaataaactatgcatgtgatatta |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |
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|
| T |
40087017 |
ctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatccatgtgatatta |
40086918 |
T |
|
| Q |
719 |
tcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataataaggttgaaggagtcataccatact |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
40086917 |
tcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataagaaggttgaaggagtcataccatact |
40086818 |
T |
|
| Q |
819 |
catcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaa |
918 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40086817 |
catcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaa |
40086718 |
T |
|
| Q |
919 |
tgaaaaatgatacaatatcagctaa |
943 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
40086717 |
tgaaaaatgatacagtatcagctaa |
40086693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 40061768 - 40061419
Alignment:
| Q |
19 |
actttggactaacaaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaact |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
40061768 |
actttggactaataaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatggattacacttttttagtaactctattcaattaaact |
40061669 |
T |
|
| Q |
119 |
atctattttgattgagataattgtgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctgg |
218 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061668 |
atctattttgattgaaataattgcgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctgg |
40061569 |
T |
|
| Q |
219 |
taagatgctaacagaccatgcaggcaggtgatatgaattgccactgaaatttacagttttatcagatttggcgtccacattggcgagaaaggcaacacat |
318 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||| ||||| |
|
|
| T |
40061568 |
taagatgctaacagaccatgcaggcaagtgatatgaattgccactgaaatttacagttttatcacttttagtgtccacgttggcgagaaaggcagcacat |
40061469 |
T |
|
| Q |
319 |
acagatcctgtcttataaacggccgcctgcggtttaattagtaaaagact |
368 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
40061468 |
acagatcctgtcttataaactgccgcctgcgttttaaatagtaaaagact |
40061419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 22 - 373
Target Start/End: Complemental strand, 40079913 - 40079560
Alignment:
| Q |
22 |
ttggactaacaaataagagaaaacaccttgg-tatagatagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaactat |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
40079913 |
ttggactaacaaataagagaaaacagcttggctatagatagaataatcacaaaatgaatattaatcacactttttttgtaactctattcaattaaactat |
40079814 |
T |
|
| Q |
121 |
ctattttgattgagataattgt-gttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggt |
219 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079813 |
ctattttgattgcgataattgttgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggt |
40079714 |
T |
|
| Q |
220 |
aagatgctaacagaccatgcaggcaggtgatatgaattgccactgaaatttacagttttatcagatttggcgtccacattggcgagaaaggcaacacata |
319 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| | ||||| ||||||||||||||| |||||| |
|
|
| T |
40079713 |
aagatgctcacagaccatgcaggcaagtgatatgaattgccactgaaatttacggttttatcatttttagtatccacgttggcgagaaaggcagcacata |
40079614 |
T |
|
| Q |
320 |
cagatcctgtcttataaacggccgcctgcggtttaattagtaaaagactattaa |
373 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
40079613 |
cagatcctgtcttataaactgccgcctgcggtttaaatagtaaaagactgttaa |
40079560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 407 - 943
Target Start/End: Complemental strand, 40061339 - 40060794
Alignment:
| Q |
407 |
gattgacaaaccagatgagttttagttacaaaatatattatatcctaagacacggaataagatgtttcaaacgaacaaaaatttcaatataaaccatcta |
506 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||| || |||||||| ||||| |||||||||||||||||||| || |
|
|
| T |
40061339 |
gattgacaaactggatgagttttagttacaaaataaattctatcctaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctc |
40061245 |
T |
|
| Q |
507 |
tacctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40061244 |
tacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccc |
40061145 |
T |
|
| Q |
607 |
cacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaat--------------ccaatcgtccagtgtaatttctcttctatataca |
692 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||| || |||| ||||||| |||| ||||||||||||||||||| | ||| | |
|
|
| T |
40061144 |
cacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatata |
40061045 |
T |
|
| Q |
693 |
agaaataaactatgcatgtgatattatcaatttatcttcttcgatgtattaccagtgttgta-tttgtgacggctacaacatgaacaatagat-ttcaat |
790 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | ||||||| ||||||||||||||||| | || || | | |
|
|
| T |
40061044 |
agaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctacaacatgaacaacatatatttagt |
40060945 |
T |
|
| Q |
791 |
aataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttc |
890 |
Q |
| |
|
| ||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
40060944 |
atgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttc |
40060847 |
T |
|
| Q |
891 |
ctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaa |
943 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||| ||||| |||| |
|
|
| T |
40060846 |
ctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaa |
40060794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 378 - 943
Target Start/End: Complemental strand, 40079503 - 40078920
Alignment:
| Q |
378 |
gggaatttttcaaagaaagaatcttacacgattgacaaaccagatgagttttagttacaaa-----atatatta-tatcctaagacacggaataagatgt |
471 |
Q |
| |
|
||||||||| || |||||| | |||||| ||||||||||| ||| || |||||||||||| | ||||| ||||||||||| ||| |||||||| |
|
|
| T |
40079503 |
gggaattttccagagaaagtaacttacaagattgacaaactagaagaattttagttacaatgatccagatatttctatcctaagacgtggagtaagatgt |
40079404 |
T |
|
| Q |
472 |
ttcaaacgaacaaaaatttcaatataaaccatctatacctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaa |
571 |
Q |
| |
|
||| ||| ||||||||||||||| | |||| |||||||||||||||| |||||||||| | ||||||||| || | |||||||| |||||||||||||| |
|
|
| T |
40079403 |
ttcgaacagacaaaaatttcaatacataccacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaa |
40079304 |
T |
|
| Q |
572 |
gctttatggccttgtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaa-----aaatccaatcgt |
666 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| | ||| |||||| ||| | | ||| || |
|
|
| T |
40079303 |
gctttatggccttgtgtacatctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgt |
40079204 |
T |
|
| Q |
667 |
ccagtgtaatttctcttctatatacaagaaataaactatgcatgtgatattatcaatttatcttctt-------cgatgtattaccagtgttgtatttgt |
759 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |||||||| ||| ||||||| ||||||||||||| ||| |||||||||||| || ||||| |
|
|
| T |
40079203 |
ccagtgtaatttctcttctaaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgc |
40079104 |
T |
|
| Q |
760 |
gacggctacaacatgaacaatagatttcaataataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaat |
859 |
Q |
| |
|
|| ||||||||||||||||| | || || |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40079103 |
gatggctacaacatgaacaaaatatactcgtattaaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaa |
40079004 |
T |
|
| Q |
860 |
ggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaa |
943 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| | ||| |||||| |
|
|
| T |
40079003 |
ggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtattagctaa |
40078920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 550 - 633
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
550 |
gctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccccacttcggctgcctaataactcctgca |
633 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||| |||||||| |
|
|
| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 22013913 - 22013994
Alignment:
| Q |
176 |
gacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctaacagaccatgcaggcaggtgatatgaatt |
257 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||| || ||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
22013913 |
gacaaacctttgcagtattgagtacaacatttttgcagtccggtaagatgctcacagaccatccaggcaagtgatatgaatt |
22013994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 808 - 907
Target Start/End: Original strand, 22014420 - 22014519
Alignment:
| Q |
808 |
cataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
907 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
|
|
| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 902
Target Start/End: Original strand, 52548938 - 52548999
Alignment:
| Q |
841 |
ataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
902 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | |||| |||||||| ||||||||||| |||| |
|
|
| T |
52548938 |
ataacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 44349193 - 44349263
Alignment:
| Q |
181 |
acctttgcagtattaagcactacattcttgcaatctggtaagatgctaacagaccatgcaggcaggtgata |
251 |
Q |
| |
|
||||||||||| || | ||| ||||||||||||||||| | |||||||| |||||||| ||||||||||| |
|
|
| T |
44349193 |
acctttgcagtgttgaacacaacattcttgcaatctggaagaatgctaactgaccatgctggcaggtgata |
44349263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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