View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17954_low_10 (Length: 425)
Name: NF17954_low_10
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 414
Target Start/End: Complemental strand, 21078906 - 21078513
Alignment:
| Q |
21 |
atgtctgcaaggtcttgttatcagtagaaaatgaacggggaatcttgaatctcagcaccaaactcttcttagtgttattataagggaccttcaccttggt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21078906 |
atgtctgcaaggtcttgttatcagtagaaaatgaacggggaatcttgaatctcagcaccaaactcttcttagtgttattataagggaccttcaccttggt |
21078807 |
T |
|
| Q |
121 |
atctggtgtttcaccagtgtcattagatgatgaaggttgaatcttgaatctcagcaccaagctcttttctctgttattcttgttaatactcttcactttg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
21078806 |
atctggtgtttcaccagtgtcattagatgatgaaggttgaatcttgaatctcagcaccaagctcttttctctattattcttgttaatacccttcactttg |
21078707 |
T |
|
| Q |
221 |
gtccctggtgtttcatcaatgtcaccgctatcttgtttctggatgttgtcattatctgtagtattgcttgaaagtttgagccttttaggtgtgtgnnnnn |
320 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21078706 |
gtccctggtgtttcatcaatgtcaccactatcttgtttctggatgttgtcattatctgtagtattgcttgaaattttgagccttttaggtgtgtgatcat |
21078607 |
T |
|
| Q |
321 |
nnnnnnnnnnnnnnnnnccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcac |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21078606 |
catcatcgtcatcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcac |
21078513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 3073724 - 3073780
Alignment:
| Q |
352 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
408 |
Q |
| |
|
||||||||| |||||| ||| |||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
3073724 |
agacatatcgaagagtgtatatgctccattaagatgttcatgatcaatgatatttct |
3073780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 27732088 - 27732144
Alignment:
| Q |
352 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
408 |
Q |
| |
|
|||||||| |||||| | |||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
27732088 |
agacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatatttct |
27732144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University