View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_11 (Length: 386)
Name: NF17954_low_11
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 227 - 376
Target Start/End: Complemental strand, 24690332 - 24690183
Alignment:
| Q |
227 |
tggttggaatgaaacaaagagagtgggaaatggtcatattctcgtgaatgagacattgtcgattttctttgtttcatgacaaacaaaggagtgggaagtc |
326 |
Q |
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| T |
24690332 |
tggttggaatgaaacaaagagagtgggaaatggtcatattctcgtgaatgagacattgtcgattttctttgtttcatgacaaacaaaggagtgggaagtc |
24690233 |
T |
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| Q |
327 |
ttgattcactgttttcatgtgaagtcacttgtcaactactttcaattcat |
376 |
Q |
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| T |
24690232 |
ttgattcactgttttcatgtgaagtcacttgtcaactactttcaattcat |
24690183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 24690541 - 24690395
Alignment:
| Q |
19 |
atacatatgtactagctagctagtggannnnnnnn-gcctagctctaatgaagctaattagttaaagaatattttatggtgatatcaacatcataaattt |
117 |
Q |
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| T |
24690541 |
atacatatgtactagctagctagtggaattttttttgcctagctctaatgaagctaattagttaaagaatattttatggtgatatcaacatcataaattt |
24690442 |
T |
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| Q |
118 |
gttgtaagggtgaacaaaatccggtggaaattgacaaaagtgtagat |
164 |
Q |
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| T |
24690441 |
gttgtaagggtgaacaaaatccggtggaaattgacaaaagtgtagat |
24690395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 17179851 - 17179798
Alignment:
| Q |
238 |
aaacaaagagagtgggaaatggtcatattctcgtgaatgagacattgtcgatttt |
292 |
Q |
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| T |
17179851 |
aaacaaaaaaagttggaaatggtcat-ttctcgtgaatgagacattgtcgatttt |
17179798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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