View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_12 (Length: 383)
Name: NF17954_low_12
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_12 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 79 - 373
Target Start/End: Original strand, 15885319 - 15885625
Alignment:
| Q |
79 |
tttggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggata |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15885319 |
tttggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggata |
15885418 |
T |
|
| Q |
179 |
ataagccccttgaaatataatttagatgaatgttagatacttat------------tattattatccacatcgaagcatagtgttttcaagtctcattag |
266 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
15885419 |
ataaaccccttgaagtataatttagatgaatgttagatacttattattattattattattattatccacatcgaaacatagtgttttcatgtctcattag |
15885518 |
T |
|
| Q |
267 |
ccacatgcattttacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaaga |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15885519 |
ccacatgcattttacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaaga |
15885618 |
T |
|
| Q |
367 |
gtgatga |
373 |
Q |
| |
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||||||| |
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| T |
15885619 |
gtgatga |
15885625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 373
Target Start/End: Complemental strand, 12637426 - 12637335
Alignment:
| Q |
282 |
ttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgatga |
373 |
Q |
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|||||||||||| ||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
12637426 |
ttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaagagtgatga |
12637335 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 12610319 - 12610242
Alignment:
| Q |
296 |
ttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgatga |
373 |
Q |
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||||||||||||| |||||||| | | || ||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
12610319 |
ttggtgctggaggtgatacatcagcttctactatagtttgggcaatgtcagagttggtaagggataaaagagtgatga |
12610242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 12637701 - 12637629
Alignment:
| Q |
113 |
aatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggataataagcc |
185 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||| ||||||||| || |||| ||||| |||||||||| |
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| T |
12637701 |
aatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataagcc |
12637629 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 12610727 - 12610618
Alignment:
| Q |
81 |
tggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggataat |
180 |
Q |
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|||| |||||||||||||||| |||| || | ||||| | | |||||||||| |||||||| ||||| |||||| || || |||| ||||||||||| |
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| T |
12610727 |
tggtagacgttcttctaaaattccaaggtggtaatgacagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataat |
12610628 |
T |
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| Q |
181 |
aagccccttg |
190 |
Q |
| |
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|| ||||||| |
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| T |
12610627 |
aaaccccttg |
12610618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 373
Target Start/End: Complemental strand, 62591 - 62490
Alignment:
| Q |
272 |
tgcattttacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgat |
371 |
Q |
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|
||||||||| ||||||||||||||||||||||||||| |||||||| | | | |||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
62591 |
tgcattttaattttcaggacatgtttggtgctggaggtgatacatcagctttgagcgtagtttgggcaatggcagagttggtaagagatccaagagtgat |
62492 |
T |
|
| Q |
372 |
ga |
373 |
Q |
| |
|
|| |
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|
| T |
62491 |
ga |
62490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 21780244 - 21780163
Alignment:
| Q |
279 |
tacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggat |
360 |
Q |
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|||||||||||||||||||||||||||||| || ||||| | |||||||| ||||||||||| ||| ||||||||||| |
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| T |
21780244 |
tacttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggat |
21780163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 6323 - 6391
Alignment:
| Q |
279 |
tacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcaga |
347 |
Q |
| |
|
||||||| ||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||| |
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|
| T |
6323 |
tactttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcaga |
6391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 23036601 - 23036523
Alignment:
| Q |
279 |
tacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagg |
357 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||| | |||||||| ||||||||||||||| |||||||| |
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| T |
23036601 |
tacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaagg |
23036523 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 23149184 - 23149108
Alignment:
| Q |
284 |
ttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggat |
360 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||| | |||||||| ||||||||||| |||| |||||| |||| |
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| T |
23149184 |
ttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggat |
23149108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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