View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_13 (Length: 382)
Name: NF17954_low_13
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 29854070 - 29854424
Alignment:
| Q |
20 |
ctgaaccttgagattaatagtatttattatatcgtttcttaagacacatgttagcattttctctaaaatattactaataaatactctcatggtattggtt |
119 |
Q |
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| T |
29854070 |
ctgaaccttgagattaatagtatttattatatcgttttttaagacacgtgttagcattttccttaaaatattgctaataaatactctcatggtattggtt |
29854169 |
T |
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| Q |
120 |
aaacggttaaaaattgtaaatttgtgtaaaaacattatgtatttattacnnnnnnnnnnnatatgtagtatttgactaatattttcaatacaatattttt |
219 |
Q |
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| T |
29854170 |
aaacggttaaaaattgtaaatttgtgtaaaaaaattatgtatttaatactttttttttt-atatgtagtatttgactaatatttttaatacaatattttt |
29854268 |
T |
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| Q |
220 |
gtttatgaattcattaaataatatttttagtatacttattagcataacctttatttatgagtttatttgataaacgccaaaacaactcacactctacatg |
319 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29854269 |
gtttatggattcattaaacaatatttttagtatacttattagcataacttttatttatgagtttatttgataaacgccaaaacaactcacactctacatg |
29854368 |
T |
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| Q |
320 |
acttaataattaggttccaagttatgtgaactgtactctaggtagtacctatgctt |
375 |
Q |
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| T |
29854369 |
acttaataattaggttccaagttatgtgaactgtagtctaggtagtacctatgctt |
29854424 |
T |
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