View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_15 (Length: 378)
Name: NF17954_low_15
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 51741354 - 51740991
Alignment:
| Q |
15 |
aaaatcaaccataaaagtattgtcaatctcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactttcaata |
114 |
Q |
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| T |
51741354 |
aaaatcaaccataaaagtattgtcaatctcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactttcaata |
51741255 |
T |
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| Q |
115 |
tgttctttatgtgacaaagacgaagacnnnnnnnntctgatgattgtcagattaatgcgagggcattttgaaattcttaggctccaagctatagcctcac |
214 |
Q |
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| T |
51741254 |
tgttctttatgtgacaaagacgaagacaaaaaaaatctgatgattgtcagattaatgcgagggcattttgaaattcttaggctccaagctatagcctcac |
51741155 |
T |
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| Q |
215 |
gatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgtactatcagatgtaatcaactgtgagaaaccagggaccttagacatccctctttcgat |
314 |
Q |
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| T |
51741154 |
gatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgtactatcagatgtaatcaattgtgagaaaccagggaccttagacatccctctttcgat |
51741055 |
T |
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| Q |
315 |
aataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttct |
378 |
Q |
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| T |
51741054 |
aataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttct |
51740991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 10202155 - 10201914
Alignment:
| Q |
15 |
aaaatcaaccataaaagtattgtcaatctcat---tcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactt--- |
108 |
Q |
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| T |
10202155 |
aaaatcaaccatgaagttattgtcaatctcatcattcgcagtctcttccccggacaacgacattaaaatctctttttccttagattgtactccactttta |
10202056 |
T |
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| Q |
109 |
tcaatatgttctttatgtgacaaagacgaagacnnnnnnnntctgatgattgtcagattaatgcgagggcattttgaaattcttaggctccaagctatag |
208 |
Q |
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| T |
10202055 |
tcaatttgttcattttctaatttagacgacaac---aaaaatctaatgattgtcaagttaattcgagggcattttgaaatgcgtaggctccaagcaacag |
10201959 |
T |
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| Q |
209 |
cctcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttt |
253 |
Q |
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| T |
10201958 |
cctcgcggtcatccggccctccaaaaaaaagtgttgcaacatttt |
10201914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 10201863 - 10201789
Alignment:
| Q |
304 |
cctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttct |
378 |
Q |
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| T |
10201863 |
cctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttct |
10201789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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