View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_16 (Length: 373)
Name: NF17954_low_16
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 7502277 - 7502060
Alignment:
| Q |
17 |
ctatgtgcattgaagcggtaaacttcaaaatcagaactttattgaattcacatatcacaaccatcaacttgttctaattctgcttgttatagcagtggtc |
116 |
Q |
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| T |
7502277 |
ctatgtgcattgaagaggtaaacttcaaaatcagaactttattgaattcacatatcacaaccatcaacttgttctaattctgcttgttatagcagtggtc |
7502178 |
T |
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| Q |
117 |
gtcggaagaacaagtgcagaagcaagcaccgggcggggaaagtgacgtctagtgtcatgg-nnnnnnnttggtaaactaaagagttccctttttcttggt |
215 |
Q |
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| T |
7502177 |
gtcggaagaacaagtgcagaagcaagcaccaggcggggaaagtgacgtctagtgtcatggaaaaaaaattggtaaactaaagagttccctttttcttggt |
7502078 |
T |
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| Q |
216 |
ttcttcatgcagttctga |
233 |
Q |
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| T |
7502077 |
ttcttcatgcagttctga |
7502060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 7502024 - 7501937
Alignment:
| Q |
270 |
agcttcatgttagtatgataaaggtcattcttttaaggggtagaccaagcctcagggttgtgcattatatggtttttcatcatagaac |
357 |
Q |
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| T |
7502024 |
agcttcatgttagtatgttaaaggtcattcttttaaggggcagaccaagcctcagggtggtgcattatatggtttttcatcatagaac |
7501937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 7499215 - 7499127
Alignment:
| Q |
33 |
ggtaaacttcaaaatcagaactttattgaattcacata-tcacaaccatcaacttgttctaattctgcttgttatagcagtggtcgtcg |
120 |
Q |
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| T |
7499215 |
ggtaaccttcaaaatcaaaactttatggaattcacatattcacaaccataaacgagtttttattctgattgttctaacagtggtcgtcg |
7499127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 8139599 - 8139653
Alignment:
| Q |
122 |
aagaacaagtgcagaagcaagcaccgggcggggaaagtgacgtctagtgtcatgg |
176 |
Q |
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| T |
8139599 |
aagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatgg |
8139653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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