View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_17 (Length: 349)
Name: NF17954_low_17
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 48714265 - 48713953
Alignment:
| Q |
18 |
agaacagtaccaaaaacgtcggagacgaggagaatgacgaaggtgcaaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggc |
117 |
Q |
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| T |
48714265 |
agaacagtaccaaaaatgtcggagacgaggagaatgacgaaggtgcaaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggc |
48714166 |
T |
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| Q |
118 |
cagcaccactgaaggagttcagaattggtgggtttgagcagcatgccggacctaacatttttgtttgtttgaccttttaattttacttccctccaaaata |
217 |
Q |
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| T |
48714165 |
cagcaccactgaaagagttcagaattggtgggtttgagcagcatgccggacctaacatttttgtttgtttgaccttttaattttacttccctccaaaata |
48714066 |
T |
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| Q |
218 |
ctcaacactcgtatttctatttataactagattagatgtatgtgtaggacccactacatgtgggtaaaatccagccaaagaaatttgcttctcacaaatt |
317 |
Q |
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| T |
48714065 |
cttaacactcacatttctatttataactagattagatgtatgtgtaggacccactacatgcgggtaaaatccagccaaagaaatttgcttctaacaaatt |
48713966 |
T |
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| Q |
318 |
gaatgctgcttgt |
330 |
Q |
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| T |
48713965 |
gaatgctgcttgt |
48713953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 59 - 257
Target Start/End: Complemental strand, 48695958 - 48695754
Alignment:
| Q |
59 |
ggtgcaaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagcaccactgaaggagttcagaattggtgggtttgagcag |
158 |
Q |
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| T |
48695958 |
ggtggaaagaggagagccagtgaggtaagcatcaagaccaccaattttttcaacatggccagctccactaaaggggttcagaattggtgggttagagcag |
48695859 |
T |
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| Q |
159 |
catgccggacctaacatttttgtttgtttgaccttt--------taattttacttccctccaaaatactcaacactcgtatttctatttataactagatt |
250 |
Q |
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| T |
48695858 |
catgcatgacctgacatttttgtttctttgactttttgttttgctaactgcacttccctcc--aatactcaacactcccatttctatttataactagact |
48695761 |
T |
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| Q |
251 |
agatgta |
257 |
Q |
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| T |
48695760 |
agatgta |
48695754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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