View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_18 (Length: 324)
Name: NF17954_low_18
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_18 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 44727652 - 44727966
Alignment:
| Q |
10 |
acatcatccaaagggttcacacctaacttataaggtttctttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccaccta |
109 |
Q |
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| T |
44727652 |
acatcatccaaagggttcacacctaacttataaggtttctttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccaccta |
44727751 |
T |
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| Q |
110 |
caattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagcctttcacaattttcaaacacctctttgtttacttc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44727752 |
caattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagcttttcacaattttcaaacacctctttgtttacttc |
44727851 |
T |
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| Q |
210 |
ctcaaactcctcccgtgttacatccctacgattgagtgacgttaaataaaccttaacacttgcctcagacgaaagcttagtaatcgcgttgtggactata |
309 |
Q |
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| T |
44727852 |
ctcaaactcctcccgtgttacatccctacgattgagtgacgttaaataaaccttaacacttgcctcggacgaaagcttagtaatcgcgttgtggactata |
44727951 |
T |
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| Q |
310 |
cttcgaagagaagcc |
324 |
Q |
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| T |
44727952 |
cttcgaagagaagcc |
44727966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 47843250 - 47843064
Alignment:
| Q |
37 |
ttataaggtttctttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaa |
136 |
Q |
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| T |
47843250 |
ttataaagttcctttcctttgcatattttagtaacaagatccttcaccttcggtatattccaacatccaccaacaattatcacatcatttatatcatcaa |
47843151 |
T |
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| Q |
137 |
cttctatctttgcatcttgtatgcattggatgattagcctttcacaattttcaaacacctctttgtttacttcctcaaactcctccc |
223 |
Q |
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| T |
47843150 |
cttttatatctgcatcttgcaagctttggatgatcagcctttcacacttttcaaacacctctttatttacatcctcaaactcctccc |
47843064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 47845187 - 47845361
Alignment:
| Q |
48 |
ctttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatcttt |
147 |
Q |
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|||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |||| |
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| T |
47845187 |
ctttactttgcatattttagtaacaagattcttcacc-ttggtatattacaacatccacctacaattatcacatcatttatattcttagtttccaccttt |
47845285 |
T |
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| Q |
148 |
gcatcttgtatgcattggatgattag--cctttcacaattttcaaacacctctttgtttacttcctcaaactcctc |
221 |
Q |
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| T |
47845286 |
gcatcatgcaagcattggatgattagcccctttcacacttctcaaacacctctttgtttacatcctcaaactcctc |
47845361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 42926687 - 42926854
Alignment:
| Q |
49 |
tttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttg |
148 |
Q |
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| T |
42926687 |
tttcctttgcatattgtagtaacaagattctccacctttggtataatacaacatc-acctacaattatcacatcatttatactctcaacgtctacttttg |
42926785 |
T |
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| Q |
149 |
catcttgtatgcattggatgattagcctttcacaattttcaaacacctctttgtttacttcctcaaactcctc |
221 |
Q |
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| T |
42926786 |
catcttgcaagcattggatgattag----tcacccttctcaaacacttctttgtttacttcgtcaaactcctc |
42926854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 47879339 - 47879514
Alignment:
| Q |
49 |
tttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttg |
148 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |||| ||||||| | | ||||| |
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| T |
47879339 |
tttcctttgcatattttagtaacaagattcttcacccttggtatattccaacatccaccaacaattataacatcatttaaattctcagtgtttcactttg |
47879438 |
T |
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| Q |
149 |
catcttgtatgcattggatgattagcctttcacaattttcaaacacctctttgtttacttcctcaaactcctcccg |
224 |
Q |
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| T |
47879439 |
catctttcaagcactggatgattagcctttcacatatttcaaatacctcttagtttacatcttcaaactcctcccg |
47879514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 21251104 - 21250976
Alignment:
| Q |
91 |
atattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtat-gcattggatgattagcctttcacaattttca |
189 |
Q |
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| T |
21251104 |
atattacaacatccacttaccattatcacatcatttatattctcaacttctacctttgcatcttgtaaagcatcgggatattagtctttcacactactca |
21251005 |
T |
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| Q |
190 |
aacacctctttgtttacttcctcaaactc |
218 |
Q |
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| T |
21251004 |
aacacctctttgtatacatcctcaaactc |
21250976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 21130922 - 21131052
Alignment:
| Q |
91 |
atattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgt-atgcatt-ggatgattagcctttcacaattttc |
188 |
Q |
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| T |
21130922 |
atattacaacatccacttaccattatcacatcatttatattctcaacttctacctttgcatcttgtaaagtattaggat-attagtctttcacactactc |
21131020 |
T |
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| Q |
189 |
aaacacctctttgtttacttcctcaaactcct |
220 |
Q |
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| T |
21131021 |
aaacacctctttgtatacatcctcaaactcct |
21131052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 808326 - 808205
Alignment:
| Q |
98 |
aacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagcctttcacaattttcaaacacctc |
197 |
Q |
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|||||||||| |||| ||||||||| ||||||| | | ||||||| ||||||||| |||| ||||||||||| || |||||||| ||||| |||||||| |
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| T |
808326 |
aacatccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctc |
808227 |
T |
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| Q |
198 |
tttgtttacttcctcaaactcc |
219 |
Q |
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| T |
808226 |
tttgttcacctcctcaaactcc |
808205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 39242015 - 39241854
Alignment:
| Q |
57 |
gcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgt |
156 |
Q |
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|||||| || ||||||||| || |||||||| |||| | |||||||| | |||||||||||||| |||| || |||||||| || ||||||||| ||| |
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| T |
39242015 |
gcatatcttggtaacaagattcctcacccttgggatataagaacatccatcaacaattatcacatcatttacatcctcaacttttacctttgcatcatgt |
39241916 |
T |
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| Q |
157 |
atgcattggatgattagcctttcacaattttcaaacacctctttgtttacttcctcaaactc |
218 |
Q |
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| || |||||||| || |||||||| ||| ||||||||| ||||| |||||||||||||| |
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| T |
39241915 |
aaacactggatgataaggctttcacattttccaaacacctgcttgttcacttcctcaaactc |
39241854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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