View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_20 (Length: 299)
Name: NF17954_low_20
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 50804988 - 50804717
Alignment:
| Q |
19 |
gcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50804988 |
gcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgttgaaagtggt |
50804889 |
T |
|
| Q |
119 |
atgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtagaaacaaatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50804888 |
atgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtctctgctcacaatggtagaaacaaatcc |
50804789 |
T |
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| Q |
219 |
ccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804788 |
ccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
50804717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 50870889 - 50871160
Alignment:
| Q |
19 |
gcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50870889 |
gcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgttgaaagtggt |
50870988 |
T |
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| Q |
119 |
atgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtagaaacaaatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50870989 |
atgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtctctgctcacaatggtagaaacaaatcc |
50871088 |
T |
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| Q |
219 |
ccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871089 |
ccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
50871160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 19057200 - 19057467
Alignment:
| Q |
19 |
gcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057200 |
gcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggt |
19057299 |
T |
|
| Q |
119 |
atgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtagaaacaaatcc |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
19057300 |
atgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtattctctgctcacaatggtagaaacaaatcc |
19057399 |
T |
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| Q |
219 |
ccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatg |
286 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19057400 |
ccggagttaggtaggaccacaatgccaagactaatgtatgttatgtgtgattgtaggatgtcctgatg |
19057467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 42348931 - 42349049
Alignment:
| Q |
20 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcagggg---------aatgaaattgagatttgtgtcg |
110 |
Q |
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||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
42348931 |
caagatggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
42349030 |
T |
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| Q |
111 |
aaagtggtatgtactcttc |
129 |
Q |
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||||||||||| ||||||| |
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| T |
42349031 |
aaagtggtatgcactcttc |
42349049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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