View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_26 (Length: 224)
Name: NF17954_low_26
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 24727113 - 24726931
Alignment:
| Q |
24 |
tcatagaataccaataggttggaattataaaagattacaagagagtatatataaaacataatgaactgctaacttagcagtacaaagacccaataactta |
123 |
Q |
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| T |
24727113 |
tcatagaataccaataggttggaattataaaaggttacaagagagtatatataaaacataatgaactgctaacttagcagtacaaagacccaataactta |
24727014 |
T |
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| Q |
124 |
aaaccaataaatcgatgttgttcgttgcctgtcgccgctccttgttgaccgtctgaacctcttgacctgtcccgtcctctgtg |
206 |
Q |
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| T |
24727013 |
aaaccaataaatcgatgttgttcgttgcctgtcgccgctccttgctgaccgtctgaacctcttgacctgtcccgtcctctgtg |
24726931 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 40901355 - 40901296
Alignment:
| Q |
151 |
cctgtcgccgctccttgttgaccgtctgaacctcttgacctgtcccgtcctctgtgctcc |
210 |
Q |
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| T |
40901355 |
cctgtcgccgctcctcgataaccctctgaacctcttgacccgtctcgtcctctgtgctcc |
40901296 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 19254672 - 19254713
Alignment:
| Q |
162 |
tccttgttgaccgtctgaacctcttgacctgtcccgtcctct |
203 |
Q |
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| T |
19254672 |
tcctcgttgcccgtctgaacctcttgacctgtctcgtcctct |
19254713 |
T |
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