View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_29 (Length: 216)
Name: NF17954_low_29
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_29 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 40060644 - 40060851
Alignment:
| Q |
9 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacttgaaatgttcttcaca |
108 |
Q |
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| T |
40060644 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcaca |
40060743 |
T |
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| Q |
109 |
agttcaatttactatatggtattgttcttaaggccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatg |
208 |
Q |
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| T |
40060744 |
agttcaatttactatatggtattgttcttaaggccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatg |
40060843 |
T |
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| Q |
209 |
gaggaacc |
216 |
Q |
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|||||||| |
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| T |
40060844 |
gaggaacc |
40060851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 40078766 - 40078977
Alignment:
| Q |
9 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacttgaaatgttcttcaca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||| ||| || |
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| T |
40078766 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgtggtggaacatttcaaaactactatatggtattgcaacctgaaatgttgttcgca |
40078865 |
T |
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| Q |
109 |
agttcaatttactatatggtattgtt-cttaaggcca-----gtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagt |
202 |
Q |
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| T |
40078866 |
agttcaattt--tatatgatagtattacttcacggaaaaattggctctaagaggaattagctaatactttatcattttttattgcttgcccaaaaacagt |
40078963 |
T |
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| Q |
203 |
accatggaggaacc |
216 |
Q |
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| T |
40078964 |
accatggaggaacc |
40078977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 40086539 - 40086644
Alignment:
| Q |
9 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacttgaaatgttcttcaca |
108 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
40086539 |
acctgtggaagatctcgcatttgctgtcgcacgctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcaca |
40086638 |
T |
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| Q |
109 |
agttca |
114 |
Q |
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|||||| |
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| T |
40086639 |
agttca |
40086644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 40086684 - 40086750
Alignment:
| Q |
150 |
taagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatggaggaacc |
216 |
Q |
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| T |
40086684 |
taagaggaattagctgatactgtatcatttttcattgcttgactaaaaacagtaccatggaggaacc |
40086750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 35257855 - 35257931
Alignment:
| Q |
9 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtat |
85 |
Q |
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| T |
35257855 |
acctgttgaagaccttgcatttgctgttgcgcgttttttccagcgtggaggaagtcttcaaaattattatatggtat |
35257931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 22014836 - 22014765
Alignment:
| Q |
13 |
gtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggta |
84 |
Q |
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| T |
22014836 |
gtggaagatcttgcttttgccgttgcgcgcttttttcagcggggtggaacttttcaaaattactacatggta |
22014765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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