View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17954_low_3 (Length: 545)
Name: NF17954_low_3
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Complemental strand, 14226308 - 14225788
Alignment:
| Q |
8 |
ccaagaatattgtttggaaggactacatgatgaatgttcattttccgggtattgtgaagcactctatgcgaagtaagatgtaatatgagtcaggagcatg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14226308 |
ccaaaaatattgtttggaaggactacatgatgaatgttcattttccgggtattgtgaagcactctatgcgaagtaagatgtaatatgagtcaggagcatg |
14226209 |
T |
|
| Q |
108 |
caattatatcatatcatatctcatttaccaacaaaaactgaagtcacatgaatcaacaatgatnnnnnnn-tatatggaatagaaaataaaaatgatgct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14226208 |
caattatatcatatcatatctcatttaccaacaaaaactgaagtcacatgaatcaacgatgataaaaaaaatatatggaatagaaaataaaaatgatgct |
14226109 |
T |
|
| Q |
207 |
atgtttctttcatagaaaattattatcaatttgtttacattcgtgttgttggtcattgtattgtacnnnnnnnnacgatattcaagactgatattcatta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14226108 |
atgtttctttcatagaaaattattatcaatttgtttacattcgtgttgttggtcattgtattgtacttttttttacgatattcaagactgatattcatta |
14226009 |
T |
|
| Q |
307 |
ttcatcacttcatcaaactttactagagtcatttttagatcctctccatattttttcttgcaatgacaaatatgtgcaacaattgcgcccaagaatgata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14226008 |
ttcatcacttcatcaaactttactagagtcatttttagatcctctccatattttttcttgcaatgaaaaatatgtgcaacaattgcgcccaagaatgata |
14225909 |
T |
|
| Q |
407 |
tttattcttagcttagtaaccaaggaatttgaaggacttattgttaggacgaacaaagtaaggactagttgtattctgagttggatccatggttatcgtc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14225908 |
tttattcttagcttagtaaccaaggaatttgaaggactt-ttgttaggacgaacaaagtaaggactagttatattctgagttggatccatggttatcgtc |
14225810 |
T |
|
| Q |
507 |
ggcaaaacctcaccatcatagt |
528 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14225809 |
ggcaaaacctcaccatcatagt |
14225788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 14220621 - 14220526
Alignment:
| Q |
8 |
ccaagaatattgtttggaaggactacatgatgaatgttcattttccgggtattgtgaagcactctatgcgaagtaagatgtaatatgagtcaggag |
103 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
14220621 |
ccaaaaatattgattggaaggactacatgatgaacgttcattttccaggtcttgtgaagcactctatgcgaagtaagatgtaatatgggccaggag |
14220526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 14218127 - 14218073
Alignment:
| Q |
210 |
tttctttcatagaaaattattatcaatttgtttacattcgtgttgttggtcattg |
264 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
14218127 |
tttctttcatggaaaattattatcaattcgtttacattcgagttgttggttattg |
14218073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 14218189 - 14218140
Alignment:
| Q |
121 |
tcatatctcatttaccaacaaaaactgaagtcacatgaatcaacaatgat |
170 |
Q |
| |
|
||||||||||||||| || |||||||||| ||| ||||||||||||||| |
|
|
| T |
14218189 |
tcatatctcatttactcacgaaaactgaagacacgtgaatcaacaatgat |
14218140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University