View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17954_low_4 (Length: 534)
Name: NF17954_low_4
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 44988199 - 44988714
Alignment:
| Q |
1 |
agttcttctgagtaattctttcgttcaatttctagggtttagctctcatcgtctctccaaaccttcatcgtccgcacaccctcacctgctgccatggcga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44988199 |
agttcttctgagtaattctttcgctcaatttctagggtttagctctcatcgtctctccaaaccttcatcgtccgcacaccctcacctgctgccatggcga |
44988298 |
T |
|
| Q |
101 |
gtaccaaagttcaaagggtcatgacccaacccattgtatgctttctcatcacactctttccctttcaacttctctttaacaacttaacctaatctccg-n |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44988299 |
gtaccaaagttcaaagggtcatgacccaacccattgtatgctttctcatcacactctttccctttcaatttctctttaacaacttaacctaatctccgtt |
44988398 |
T |
|
| Q |
200 |
nnnnnnctcagaacttgatcttcagatttcttcaaagcaaagcgcggattcagatttggctttttgagcaaaaggatttgaggattgaaggaagaatcat |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44988399 |
ttttttctcagaacttgatcttcagatttcttcaaagcaaagcgcggattcagatttggctttttgagcaaaaggatttgaggattgaaggaagaatcat |
44988498 |
T |
|
| Q |
300 |
tgtaagnnnnnnnnnnnnnnnnaaaatcactgtttttcatggcatgttttagaataggagattaggaggaaccgaggaagaacacttgtcactatgcttt |
399 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44988499 |
tgtaagttttttattttatttt-aaatcattgtttttcatggcatgttttagaataggagattagaaggaaccgaggaagaacacttgtcactatgcttt |
44988597 |
T |
|
| Q |
400 |
tcaatcttggtgtagttaactcaaaatcatgtgcctcaacaagtctaggtatcaaaattgagttaactcaattataaatctgtttccatgtaaaattcgc |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44988598 |
tcaatcttggtgtagttaactcaaaatcatgtgcctcaacaagtctaggtatcaaaattgagttaactcaattataaatctgtttccatgtaaaattagc |
44988697 |
T |
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| Q |
500 |
tagattcacaagcttga |
516 |
Q |
| |
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||||||||||||||||| |
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| T |
44988698 |
tagattcacaagcttga |
44988714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 30881877 - 30882013
Alignment:
| Q |
25 |
tcaatttctagggtttagctctcatcgtctctccaaaccttcatcgtccgcacaccctcacctgctgccatggcgagtaccaaagttcaaagggtcatga |
124 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||| ||||| |||| |
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| T |
30881877 |
tcaatttttagggtttagctctcatcgtctctccaaaccttcaccgtccgctcaccctcaccagctgccatggcgagcaccaaagttcagagggttatga |
30881976 |
T |
|
| Q |
125 |
cccaacccattgtatgctttctcatcacactctttcc |
161 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| |
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| T |
30881977 |
cccaacccattgtacgctttctcaacacactctttcc |
30882013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 30882197 - 30882264
Alignment:
| Q |
238 |
aaagcgcggattcagatttggctttttgagcaaaaggatttgaggattgaaggaagaatcattgtaag |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
30882197 |
aaagcgcggattcagatttggctttttgagcagaaggatttgagaattgaaggaagaatcattgtaag |
30882264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 30882087 - 30882116
Alignment:
| Q |
208 |
cagaacttgatcttcagatttcttcaaagc |
237 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
30882087 |
cagaacttgatcttcagatttcttcaaagc |
30882116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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