View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17954_low_9 (Length: 438)
Name: NF17954_low_9
Description: NF17954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17954_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 96 - 420
Target Start/End: Original strand, 4216800 - 4217125
Alignment:
| Q |
96 |
aaataatacacacagaagccaactagattagacaaagaatagaccgatatatattcgaatatcctcctaaattgccgaattggagaacatgatcaacaag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4216800 |
aaataatacacacagaagccaactagatcagacaaagaatagaccgatatgtcttcgaatatcctcctaaattgccgaattggagaacatgatcaacaag |
4216899 |
T |
|
| Q |
196 |
atgtgatggactaatcggacgtgaacctagccactgtcgaaacagataccaaagacttctaaacacaagacaactcaaaaatagatgttcgactgtttca |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4216900 |
atgtgatggactaatcggctgtgaacctagccactgtcgaaacagataccaaagacttctaaacacaagacaactcaaaaatagatgttcgactgtttca |
4216999 |
T |
|
| Q |
296 |
tccatcccgcaaccactggaacattgaatatcagttaatggaatactcttttccgcaatacattttcttttgtaggaatcctattgt-aaaaaatagcct |
394 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4217000 |
tccatcccgcaaccactcgaacattgaatatcagttaatggaatactcttttccgtaatacattttcttttgtaggaatcctattgtaaaaaaatagcct |
4217099 |
T |
|
| Q |
395 |
ttaccatgatctagctaccaatccta |
420 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4217100 |
ttaccatgatctagctaccaatccta |
4217125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 4216697 - 4216770
Alignment:
| Q |
13 |
aaaataccacgattcacttttaaccatgaaaaggttcaaaggtttattttgtcaaataatagttgcatcgaaacttgcttgt |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
4216697 |
aaaataccacgattcacttttaaccatgaaaag--------gtttattttttcaaatgatagttgcatcgaaacttgcttgt |
4216770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University