View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17955_high_1 (Length: 496)

Name: NF17955_high_1
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17955_high_1
NF17955_high_1
[»] chr7 (12 HSPs)
chr7 (78-481)||(38323968-38324368)
chr7 (57-125)||(38169821-38169889)
chr7 (23-78)||(33864448-33864503)
chr7 (22-95)||(45582020-45582093)
chr7 (23-71)||(34150856-34150904)
chr7 (23-71)||(34176220-34176268)
chr7 (15-47)||(38323935-38323967)
chr7 (22-85)||(35096622-35096685)
chr7 (22-85)||(42800753-42800816)
chr7 (23-85)||(43029739-43029801)
chr7 (22-107)||(36741575-36741660)
chr7 (20-77)||(38288107-38288164)
[»] chr6 (5 HSPs)
chr6 (22-122)||(4161556-4161656)
chr6 (22-122)||(4223176-4223276)
chr6 (23-78)||(25570490-25570545)
chr6 (23-78)||(26104982-26105037)
chr6 (23-78)||(26004958-26005013)
[»] scaffold0176 (1 HSPs)
scaffold0176 (26-84)||(20615-20673)
[»] chr1 (1 HSPs)
chr1 (22-108)||(52214850-52214936)
[»] chr3 (1 HSPs)
chr3 (36-85)||(2220711-2220760)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 78 - 481
Target Start/End: Original strand, 38323968 - 38324368
Alignment:
Q  78 cagttctcacgacaaattttatataggtgccggacgttggactaagggctcccatggtggttgtcgttggtttgaccggaatagtaaaatttaaaaaact 177  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||    
T  38323968 cagttctcatgacaaattttatataggtgctggaagttggactaagggctccgatggt---tgtcgttggtttgaccggaatagtaaaatttaaaaaact 38324064  T
Q  178 ttttgtaatcagttggtcattttatcggttgttaaaaactttaaattgattgttctgtttattggaaacaagtgttgttgcttctatgtggttggaggtt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38324065 ttttgtaatcagttggtcattttatcggttgttaaaaactttaaattgattgttctgtttattggaaacaagtgttgttgcttctctgtggttggaggtt 38324164  T
Q  278 actgataaggcgggcaatggaatgtgtatccaatttggtaaagttttgattttttaagagaaaaggtgtattgctgttgcggagatcagaaacttgtgta 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38324165 actgataaggcgggcaatggaatgtgtatccaatttggtaaagttttgattttttaagagaaaaggtgtattgctgttgcggagatcagaaacttgtgta 38324264  T
Q  378 gactggtatgtcttatgaaggacagaaatggacaccaaacacgaattttgagtgcccaacattgttggacacgccttcagtttaaaatatcggtgttaca 477  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38324265 gactgttatgtcttatgaaggacagaaatggacaccaaacacgaattttgagtgcccaacattgttggacacaccttcagtttaaaatatcggtgttaca 38324364  T
Q  478 agtg 481  Q
    ||||    
T  38324365 agtg 38324368  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 38169889 - 38169821
Alignment:
Q  57 ttcgcttaagaaaattactttcagttctcacgacaaattttatataggtgccggacgttggactaaggg 125  Q
    ||||||||||||||||||||| |||||||  |||||||||||||| ||||| ||| | |||||||||||    
T  38169889 ttcgcttaagaaaattacttttagttctcttgacaaattttatatgggtgctggaagatggactaaggg 38169821  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 33864448 - 33864503
Alignment:
Q  23 ttgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttc 78  Q
    ||||||||||||||||||||||||||||||  | ||| ||||||||||| ||||||    
T  33864448 ttgagttagctactcacctattgaggagtgcaaattcccttaagaaaatgactttc 33864503  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 45582020 - 45582093
Alignment:
Q  22 attgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctcacgacaaatt 95  Q
    |||||||| |||| |||| ||||||||| ||| | ||||||||||||||| ||||||||| |||  ||||||||    
T  45582020 attgagttggctaatcacatattgaggaatgtaaattcgcttaagaaaatgactttcagtcctcgtgacaaatt 45582093  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 34150856 - 34150904
Alignment:
Q  23 ttgagttagctactcacctattgaggagtgtgatttcgcttaagaaaat 71  Q
    ||||||||||||||||| ||||||||||||  | |||||||||||||||    
T  34150856 ttgagttagctactcacttattgaggagtgcaaattcgcttaagaaaat 34150904  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 34176268 - 34176220
Alignment:
Q  23 ttgagttagctactcacctattgaggagtgtgatttcgcttaagaaaat 71  Q
    ||||||||||||||||| ||||||||||||  | |||||||||||||||    
T  34176268 ttgagttagctactcacttattgaggagtgcaaattcgcttaagaaaat 34176220  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 38323935 - 38323967
Alignment:
Q  15 gaatataattgagttagctactcacctattgag 47  Q
    |||||||||||||||||||||||||||||||||    
T  38323935 gaatataattgagttagctactcacctattgag 38323967  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 35096685 - 35096622
Alignment:
Q  22 attgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctc 85  Q
    ||||||||||||| |||| ||||||||||||  | ||| |||| |||||| |||||||||||||    
T  35096685 attgagttagctagtcacttattgaggagtgcaaattcacttaggaaaatgactttcagttctc 35096622  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 42800753 - 42800816
Alignment:
Q  22 attgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctc 85  Q
    ||||||||||||| |||||||||||||||||  | ||||||||  ||||| ||||||| |||||    
T  42800753 attgagttagctagtcacctattgaggagtgcaaattcgcttagaaaaatgactttcaattctc 42800816  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 43029739 - 43029801
Alignment:
Q  23 ttgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctc 85  Q
    |||||||||||| |||||||||||||||||  | |||||||   ||||| |||||||||||||    
T  43029739 ttgagttagctagtcacctattgaggagtgcaacttcgcttggaaaaatgactttcagttctc 43029801  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 36741660 - 36741575
Alignment:
Q  22 attgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctcacgacaaattttatataggtgc 107  Q
    ||||| ||||| | ||| |||||||||| ||  | ||||||||| ||||| |||||||||||||   ||||||| |||||||||||    
T  36741660 attgaattagcaagtcaactattgaggaatgcaaattcgcttaacaaaatgactttcagttctcttcacaaattctatataggtgc 36741575  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 38288107 - 38288164
Alignment:
Q  20 taattgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattacttt 77  Q
    ||||||||||||| | ||| |||||||||| ||||| |||||||||  ||||||||||    
T  38288107 taattgagttagcaagtcatctattgaggaatgtgaattcgcttaatcaaattacttt 38288164  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 4161656 - 4161556
Alignment:
Q  22 attgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctcacgacaaattttatataggtgccggacgttggacta 121  Q
    ||||||||||| | ||| |||||||||| ||||| |||||| ||| |||||||||||||||||   |||||||| ||||||||||||| | | |||||||    
T  4161656 attgagttagccagtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagatggacta 4161557  T
Q  122 a 122  Q
    |    
T  4161556 a 4161556  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 4223276 - 4223176
Alignment:
Q  22 attgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctcacgacaaattttatataggtgccggacgttggacta 121  Q
    ||||||||||| | ||| |||||||||| ||||| |||||| ||| |||||||||||||||||   |||||||| ||||||||||||| | | |||||||    
T  4223276 attgagttagccagtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagatggacta 4223177  T
Q  122 a 122  Q
    |    
T  4223176 a 4223176  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 25570490 - 25570545
Alignment:
Q  23 ttgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttc 78  Q
    |||||||||||||||||||||||| |||||  | ||||||||||||||| ||||||    
T  25570490 ttgagttagctactcacctattgaagagtgcaaattcgcttaagaaaatgactttc 25570545  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 26104982 - 26105037
Alignment:
Q  23 ttgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttc 78  Q
    |||||||||||||||||||||||| |||||  | ||||||||||||||| ||||||    
T  26104982 ttgagttagctactcacctattgaagagtgcaaattcgcttaagaaaatgactttc 26105037  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 26004958 - 26005013
Alignment:
Q  23 ttgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttc 78  Q
    |||||||||||||||| ||||||| |||||  | ||||||||||||||| ||||||    
T  26004958 ttgagttagctactcatctattgaagagtgcaaattcgcttaagaaaatgactttc 26005013  T

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Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 20673 - 20615
Alignment:
Q  26 agttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttct 84  Q
    |||||||||||||||||||||||||||  | ||||||||||||||| |||||| |||||    
T  20673 agttagctactcacctattgaggagtgcaaattcgcttaagaaaatgactttccgttct 20615  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 52214936 - 52214850
Alignment:
Q  22 attgagttagctactcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctcacgacaaattttatataggtgcc 108  Q
    |||||||||||   ||| ||| |||||| ||||| |||||| ||| |||||||||| ||||||   |||||||| ||||||||||||    
T  52214936 attgagttagcccgtcatctactgaggaatgtgaattcgctcaagcaaattacttttagttcttgtgacaaattctatataggtgcc 52214850  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 2220760 - 2220711
Alignment:
Q  36 tcacctattgaggagtgtgatttcgcttaagaaaattactttcagttctc 85  Q
    |||||||||||||| ||||| ||| |||||  ||||||||||||||||||    
T  2220760 tcacctattgaggaatgtgaattcacttaaacaaattactttcagttctc 2220711  T

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