View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17955_high_12 (Length: 296)

Name: NF17955_high_12
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17955_high_12
NF17955_high_12
[»] chr2 (1 HSPs)
chr2 (5-296)||(37430566-37430857)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 37430857 - 37430566
Alignment:
Q  5 cacaagaccataaatctcaagtccagatggatcatatattaatcacaaaggaacacatataaagagactatttaattgtaaaacataactatgagtacaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430857 cacaagaccataaatctcaagtccagatggatcatatattaatcacaaaggaacacatataaagagactatttaattgtaaaacataactatgagtacaa 37430758  T
Q  105 tacatgcatttaaaattgaagtgaattttatggaacgatacttaactaaagtgtaatgggaccagtttaatgtcacttcttgtcctcatacatatgttgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430757 tacatgcatttaaaattgaagtgaattttatggaacgatacgtaactaaagtgtaatgggaccagtttaatgtcacttcttgtcctcatacatatgttgc 37430658  T
Q  205 atactatagcaagctggcatgtgaattgtaaagcagattccaaactccaaatacatgtgcatatcaaaagtaagattgtttaggacattatt 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37430657 atactatagcaagctggcatgtaaattgtaaagcagattccaaactccaaatacatgtgcatatcaaaagtaagattatttaggacattatt 37430566  T

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