View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17955_high_7 (Length: 372)
Name: NF17955_high_7
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17955_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 6111446 - 6111794
Alignment:
| Q |
9 |
aattgtgtgggttatacatgttaaatggctctactgttttttgcaatgcatctaaaacaaggcaaaacatgcatgataattatgagatatatggttttta |
108 |
Q |
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| T |
6111446 |
aattgtgtgggttatacatgttaaatggctctactgttttttgcaatgcatctaaaacaaggcaaaacatgcatgataattatgagatatatggttttta |
6111545 |
T |
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| Q |
109 |
tttgttgcatgttggtgacatgggtttagttagacttgatgaactaggttttctaggtgatcgaactggaaatgttataaacagacatcagccttgaaag |
208 |
Q |
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| T |
6111546 |
tttgttgcatgttggtgacatgggtttagttggacttgatgaactaggttttctaggtgatcgaactggaaatgttataaacagacatcagccttgaaag |
6111645 |
T |
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| Q |
209 |
gcaatggtaagaatatatattaaatattaaacatcgctataaaaaagcagtggtaaaaatattcggttagttcttgaagataannnnnnnnnagctgcac |
308 |
Q |
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| T |
6111646 |
gcaaaggtaagaatatatattaaatattaaacatcgctataaaaaagcagtggtaaaaatattcggttagttcttgaagataatttttttttagctgcac |
6111745 |
T |
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| Q |
309 |
aatttctaaggtaaacgacatagtggatgtacacattttgaagttgttg |
357 |
Q |
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| T |
6111746 |
aatttctaaggtaaacgacatagtggatgtacacattttgaagttgttg |
6111794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 105 - 357
Target Start/End: Original strand, 6118742 - 6119000
Alignment:
| Q |
105 |
tttatttgttgcatgttggtgacatgggtttagttagacttgatgaactaggttttctaggtgatcgaa-----ctggaaatgttataaacagacatcag |
199 |
Q |
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| T |
6118742 |
tttatttgttgcatgttggtgacatgggtttagttggacttgatgaacaaggttttttaggtgatcgaattgaactgaaaatattataaacagacatcag |
6118841 |
T |
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| Q |
200 |
ccttgaaaggcaatggtaagaatatatattaaatattaaacatcgctata-aaaaagcagtggtaaaaatattcggttagttcttgaagataannnnnnn |
298 |
Q |
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| T |
6118842 |
ccttgaaaggcaatggtaagaataaatattaaatattaaacatcactatataaaaaacagtagtaaaaatattcggttagctcttgaagataattttttt |
6118941 |
T |
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| Q |
299 |
nnagctgcacaatttctaaggtaaacgacatagtggatgtacacattttgaagttgttg |
357 |
Q |
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| T |
6118942 |
tgaactgtacaatttataaggtaaacgacatagtggatgtacacattttgaagttgttg |
6119000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 6082121 - 6081766
Alignment:
| Q |
1 |
aggttccaaattgtgtgggttatacatgttaaatggctctactgttttttgcaatgcatctaaaacaaggcaaaacatgcatgataattatgagatatat |
100 |
Q |
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| T |
6082121 |
aggttccaaattgtgtgggttatacatgttaaatggctctactattttttggcatgcatataaaacaagacaaaacatacatgataattatgagaaatgc |
6082022 |
T |
|
| Q |
101 |
ggtttttatttgttgcatgttggtgacatgggtttagttagacttgatgaactaggttttctaggtgat-----cgaactggaaatgttataaacagaca |
195 |
Q |
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| T |
6082021 |
cgtttttatttgttgcatgttggtg-catggctctagt---------tggacaaggttttctaggtgatggaactgaactgaaaatgttaaaaatggaca |
6081932 |
T |
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| Q |
196 |
tcagccttgaaaggcaatggtaagaatatatattaaatattaaacatcgctat---aaaaaagcagtggtaaaaatattcggttagttcttgaagata-a |
291 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| |||||||| | || |||||| ||||||||||||| ||||||| ||||||||||| | |
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| T |
6081931 |
tcagccttgagaggcaatggtaagaatatacattaaatactaaacatcaccataaaaaaaaaatagtggtaaaaatactcggttaactcttgaagataga |
6081832 |
T |
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| Q |
292 |
nnnnnnnnnagctgcacaatttctaaggtaaacgacatagtggatgtacacattttgaagttgttg |
357 |
Q |
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|| || ||||||| ||||||||||| || |||| | |||||||||| |||||||||| |
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| T |
6081831 |
agtttgttgagttgtacaatttataaggtaaacggcaaagtgcacgtacacatttagaagttgttg |
6081766 |
T |
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