View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17955_low_10 (Length: 349)

Name: NF17955_low_10
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17955_low_10
NF17955_low_10
[»] chr4 (13 HSPs)
chr4 (12-332)||(38072879-38073199)
chr4 (12-320)||(38086389-38086697)
chr4 (12-320)||(38061601-38061903)
chr4 (12-234)||(38081964-38082186)
chr4 (12-320)||(38058551-38058853)
chr4 (18-188)||(37954219-37954389)
chr4 (247-303)||(38077976-38078032)
chr4 (22-89)||(38090795-38090862)
chr4 (22-99)||(36080187-36080264)
chr4 (18-68)||(38125625-38125675)
chr4 (22-68)||(38129582-38129628)
chr4 (22-86)||(34971530-34971594)
chr4 (22-86)||(36108051-36108115)
[»] chr6 (3 HSPs)
chr6 (30-166)||(7001405-7001541)
chr6 (29-68)||(10792884-10792923)
chr6 (138-185)||(10792938-10792985)
[»] chr2 (3 HSPs)
chr2 (31-122)||(11786968-11787059)
chr2 (22-86)||(8338676-8338740)
chr2 (18-68)||(11811316-11811366)
[»] chr1 (2 HSPs)
chr1 (138-185)||(34268650-34268697)
chr1 (29-68)||(34268712-34268751)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 38072879 - 38073199
Alignment:
Q  12 agcaaagggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatca 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38072879 agcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcaagttccatca 38072978  T
Q  112 actgtgacggtgttcactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttag 211  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38072979 actgtaacggtgtttactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttag 38073078  T
Q  212 ccattaatattatcttgcaaaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38073079 ccattaatattatcttgcaaaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaag 38073178  T
Q  312 tgtagataacctctcaccctt 332  Q
    |||||||||||||| ||||||    
T  38073179 tgtagataacctcttaccctt 38073199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 38086389 - 38086697
Alignment:
Q  12 agcaaagggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatca 111  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  38086389 agcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatca 38086488  T
Q  112 actgtgacggtgttcactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttag 211  Q
    | |||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||   ||||||||| |||||  |||    
T  38086489 attgtgacagtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatag 38086588  T
Q  212 ccattaatattatcttgcaaaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaag 311  Q
    |||| |||||| ||| ||||||| || ||||||||||||||||| |||||||| |||||||| | ||||||| |||||||||| | |||||||| ||| |    
T  38086589 ccatgaatattgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggagg 38086688  T
Q  312 tgtagataa 320  Q
    |||||||||    
T  38086689 tgtagataa 38086697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 38061903 - 38061601
Alignment:
Q  12 agcaaagggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatca 111  Q
    ||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||||    
T  38061903 agcaatgggtgaggattttttttgggctattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttcaagttccatca 38061804  T
Q  112 actgtgacggtgttcactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttag 211  Q
    | |||| | ||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||  |   || | |||| |||||| |||    
T  38061803 agtgtgtcagtgttcaatgtgccaaaaacattggatcaaaatgcaacaaagcttgttcacaagtggcagtttgtgacaagtacaattgatgaaaacatag 38061704  T
Q  212 ccattaatattatcttgcaaaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaag 311  Q
    ||||| || ||||||||||||||       |||||| ||||||| ||||| || |||| |||||||||| ||||||||||||| |||||||||| |||||    
T  38061703 ccatttatgttatcttgcaaagg------gtaaatttaagtaaaaaaggtaagtcaaattcaacagtacaagctttatttcaagccttgtttcttggaag 38061610  T
Q  312 tgtagataa 320  Q
    |||||||||    
T  38061609 tgtagataa 38061601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 38081964 - 38082186
Alignment:
Q  12 agcaaagggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatca 111  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||    
T  38081964 agcaatgggtgaagattatttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagca 38082063  T
Q  112 actgtgacggtgttcactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttag 211  Q
    || ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||   |||| |||| |||||| |||    
T  38082064 acagtgacggtgtttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatag 38082163  T
Q  212 ccattaatattatcttgcaaagg 234  Q
    |||| |||||| |||| ||||||    
T  38082164 ccatcaatattgtctttcaaagg 38082186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 38058551 - 38058853
Alignment:
Q  12 agcaaagggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatca 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  38058551 agcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagttccatca 38058650  T
Q  112 actgtgacggtgttcactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttag 211  Q
    | |||||| || |||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |  |   || | |||| ||||||||||    
T  38058651 attgtgacagtcttcaatgttccaaaaacattggaacacaatgcaacaaagcttattcacaagtggcagtttttgacaagtagaattgatgaaaacttag 38058750  T
Q  212 ccattaatattatcttgcaaaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaag 311  Q
      |||| | ||||||| ||||||       |||||||||||| | | ||  || |||| |||||||||| |||| |||||||| |||||||||| ||| |    
T  38058751 aaattactgttatcttacaaagg------gtaaattcaagtataaaggggaagtcaaaatcaacagtacaagctatatttcaagccttgtttcttggagg 38058844  T
Q  312 tgtagataa 320  Q
     ||||||||    
T  38058845 agtagataa 38058853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 37954219 - 37954389
Alignment:
Q  18 gggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatcaactgtg 117  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||| ||||| || ||  |  |||||||| ||||||| ||||| |||||||||||||||    
T  37954219 gggtgaggatctgttttgggctattagaggaggtggaggagcaagctttggagttatcatagcatggaaggtaaaactagttcatgttccatcaactgtg 37954318  T
Q  118 acggtgttcactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagc 188  Q
    ||  | ||||  ||| | || ||| ||||||| || ||||| |||||| |||| ||||||||||| |||||    
T  37954319 acaatattcagagtttctaggacactggaacataacgcaaccaagcttattcagaagtggcagttagtagc 37954389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 38077976 - 38078032
Alignment:
Q  247 tcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgttt 303  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||    
T  38077976 tcaagtaaaaaaggtgagtcaaagtcaacagtactagctttattttaagccttgttt 38078032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 38090795 - 38090862
Alignment:
Q  22 gaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagat 89  Q
    |||||| | ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||    
T  38090795 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagat 38090862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 36080187 - 36080264
Alignment:
Q  22 gaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgtt 99  Q
    |||||||| ||||||||||| || |||||||| || |||||||||||||||||  ||  ||||||||| |||||||||    
T  36080187 gaagatttattttgggctataaggggtggtggtggtgcaagttttggtgtcattcttaaatggaagattaaacttgtt 36080264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 38125625 - 38125675
Alignment:
Q  18 gggtgaagatttgttttgggctattagaggtggtggaggagcaagttttgg 68  Q
    |||||||||  | ||||||||||||||||| ||||||||||||||||||||    
T  38125625 gggtgaagaacttttttgggctattagaggaggtggaggagcaagttttgg 38125675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 38129582 - 38129628
Alignment:
Q  22 gaagatttgttttgggctattagaggtggtggaggagcaagttttgg 68  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||||    
T  38129582 gaagatcttttttgggctattagaggaggtggaggagcaagttttgg 38129628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 34971594 - 34971530
Alignment:
Q  22 gaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 86  Q
    |||||| | ||||||||||| ||||||||||| || || ||||||||||| ||  ||||||||||    
T  34971594 gaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa 34971530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 36108051 - 36108115
Alignment:
Q  22 gaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 86  Q
    |||||| | ||||||||||| ||||||||||| || || ||||||||||| ||  ||||||||||    
T  36108051 gaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttcatggaa 36108115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 7001541 - 7001405
Alignment:
Q  30 gttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatcaactgtgacggtgttcact 129  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |||||| || ||||||||| || | |||| ||||| | |    
T  7001541 gttttgagctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtatgacagtgttgaat 7001442  T
Q  130 gttccaagaacattggaacaaaatgcaacaaagcttg 166  Q
     | |||| ||||||||| |||||||||||||||||||    
T  7001441 ttgccaaaaacattggatcaaaatgcaacaaagcttg 7001405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 10792884 - 10792923
Alignment:
Q  29 tgttttgggctattagaggtggtggaggagcaagttttgg 68  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  10792884 tgttttgagctattagaggaggtggaggagcaagttttgg 10792923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 10792938 - 10792985
Alignment:
Q  138 aacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgt 185  Q
    ||||||||| |||||||||||||| ||||||||||| |||||| ||||    
T  10792938 aacattggatcaaaatgcaacaaaacttgttcacaattggcagcttgt 10792985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 11787059 - 11786968
Alignment:
Q  31 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagataaaacttgttcaagttccatcaactgtgacggt 122  Q
    |||||||||||||||||||||||||| | |||||||||| |  |  |||  |||||||||||||||||||  ||||||  ||| ||||||||    
T  11787059 ttttgggctattagaggtggtggaggtggaagttttggtattcttctttggtggaagataaaacttgttcctgttccaaaaaccgtgacggt 11786968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 8338676 - 8338740
Alignment:
Q  22 gaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 86  Q
    |||||| |||||||||||||||| |||||||| || || ||||||||||| ||  ||||||||||    
T  8338676 gaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattctttcatggaa 8338740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 11811366 - 11811316
Alignment:
Q  18 gggtgaagatttgttttgggctattagaggtggtggaggagcaagttttgg 68  Q
    |||||||||||| ||||||||||| ||||| ||||||||| |||| |||||    
T  11811366 gggtgaagatttattttgggctataagaggaggtggaggatcaagctttgg 11811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 34268697 - 34268650
Alignment:
Q  138 aacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgt 185  Q
    ||||||||| |||||||||||||| ||||||||||| |||||| ||||    
T  34268697 aacattggatcaaaatgcaacaaaacttgttcacaattggcagcttgt 34268650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 34268751 - 34268712
Alignment:
Q  29 tgttttgggctattagaggtggtggaggagcaagttttgg 68  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  34268751 tgttttgagctattagaggaggtggaggagcaagttttgg 34268712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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