View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17955_low_11 (Length: 346)
Name: NF17955_low_11
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17955_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 38476486 - 38476170
Alignment:
| Q |
18 |
acatgggtggtgtgattcttgtgtaaggagagaaccattttgatctaacgtattctagttttctccaaggtggaacatgtaaaccctttttcttcaaact |
117 |
Q |
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| T |
38476486 |
acatgggtggtgtgattcttgtgtaaggagagaaccattttgatctaacgtattctagttttctccaaggtggaacatgtaaaccctttttcttcaaact |
38476387 |
T |
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| Q |
118 |
ctgtttcgctgcctcagatgctatggctacaatactatgtaaccgatcactcttcccaacaaatacataaggaagcgtttggagaatcactttgtaagct |
217 |
Q |
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| T |
38476386 |
ctgtttcgctgcctcagatgctatggctacaatactatgtaaccgatcactcttcccaacaaatacataaggaagcgtttggagaatcactttgtaagct |
38476287 |
T |
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| Q |
218 |
ttggttgatcgagctatctcaaattctgatctgaaatcaacgtcaattatcaccctctcctttccaattaccacatcaatgtattcatattcacctaaaa |
317 |
Q |
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| T |
38476286 |
ttggttgatcgagctatctcaaattctgatctgaaatcaacgtcaattatcaccctctcctttccaattaccacatcaatgtattcatattcacctaaaa |
38476187 |
T |
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| Q |
318 |
aattaaaatttgagtat |
334 |
Q |
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| T |
38476186 |
aattaaaatttgagtat |
38476170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 313
Target Start/End: Original strand, 31418524 - 31418736
Alignment:
| Q |
101 |
ccctttttcttcaaactctgtttcgctgcctcagatgctatggctacaatactatgtaaccgatcactcttcccaacaaatacataaggaagcgtttgga |
200 |
Q |
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| T |
31418524 |
cccttcttcttcaaactctgcttcgccgcctcggatacaatagccacaatactctgtaaacgatcacacttgccaacaaatatgaaaggaagattctgga |
31418623 |
T |
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| Q |
201 |
gaatcactttgtaagctttggttgatcgagctatctcaaattctgatctgaaatcaacgtcaattatcaccctctcctttccaattaccacatcaatgta |
300 |
Q |
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|||||| ||||| ||||| || |||| ||| ||||||||||||||| ||||||||| ||||||||||| || || || ||||||| || || || || |
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| T |
31418624 |
gaatcatcttgtacgcttttgtagatctagcaatctcaaattctgatttgaaatcaatgtcaattatcaaccgttcattcccaattataacttctatata |
31418723 |
T |
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| Q |
301 |
ttcatattcacct |
313 |
Q |
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| T |
31418724 |
ttcatattcacct |
31418736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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