View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17955_low_12 (Length: 309)
Name: NF17955_low_12
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17955_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 2733555 - 2733277
Alignment:
| Q |
16 |
ataataatcaattgaatcaatgtaatgaccaatgactacctactatgcattatctttttatgcatatagaaatggagaaagactttgcagttcaacacgt |
115 |
Q |
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| T |
2733555 |
ataataatcaattgaatcaatgtaatgaccaatgactacctactatgcattatctttttatgcatatagaaatggagaaagactttgcagttcaacacgt |
2733456 |
T |
|
| Q |
116 |
ctcctagttgctcttctaaacggctttcgatttctccaccttagacattctatcccatttggatacctaaaattactaccatcttcattcctagatgcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2733455 |
ctcctagttgctcttctaaacggctttcgatttctccaccttagacattctatcccattgggatacctaaaattactaccatcttcattcctagatgcaa |
2733356 |
T |
|
| Q |
216 |
acatgatgcaagtgtgactcggcacatccctcttctgtttctttctagggtttgtatgcctgggagaaggggttttagg |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2733355 |
acatgatgcaagtgtgactcggcacatccctcttctgtttctttctagggtttgtatgcctgggagaaggggttttagg |
2733277 |
T |
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