View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17955_low_3 (Length: 494)
Name: NF17955_low_3
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17955_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 52987562 - 52987302
Alignment:
| Q |
11 |
aaaataaaaaattactttcttcatcatttaataagcacgaaatgacaaaccgaatcaactagacctaatcacacttttaaccttcatgtttctcaatcta |
110 |
Q |
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| T |
52987562 |
aaaataaaaaattactttcttcatcatttaataagcacgaaatgacaaaccgaatcaactaagcctaatcacacttttaaccttcatgtttctcaatcta |
52987463 |
T |
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| Q |
111 |
aaaaattttcactcatataannnnnnngaacgatttaaaccccacatttatttcttttttgatttcaaggtccctcacaaaactttccccaatttgacga |
210 |
Q |
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| T |
52987462 |
aaaaattttcactcata--atttttttgaacgatttaaaccccacatttatttcttttttgatttcaaggtccctcacaaaactttccccaatttgacga |
52987365 |
T |
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| Q |
211 |
tgaggtggtgagttttagtgacgtggcatccttgtcactttggcaatgtggatactagtatac |
273 |
Q |
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| T |
52987364 |
tgaggtggtgagttttagtgacgtggcatccttgtcactttgccaatgtggatactagtatac |
52987302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 478
Target Start/End: Complemental strand, 52987181 - 52987121
Alignment:
| Q |
418 |
aagtctgttaattctgaatcttaaattagggttttgctttcaattcccaaatcatcatttt |
478 |
Q |
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| T |
52987181 |
aagtctgttaattctgaatcttaaattagggttttgctttcaattcccaaatcatcatttt |
52987121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 52987238 - 52987196
Alignment:
| Q |
337 |
agaatccgggtcccaccttcttgacaccaaaacctatataaat |
379 |
Q |
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| T |
52987238 |
agaatccgggtcccaccttcttgacaccaaaacctatataaat |
52987196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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