View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17955_low_4 (Length: 444)
Name: NF17955_low_4
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17955_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 418
Target Start/End: Complemental strand, 39119489 - 39119081
Alignment:
| Q |
10 |
atcatcaagttgaatgaatttggaatgtgacagtaaagatcctctccatttctcaaaaggaatggaaagttccattactataatgagagcaccatgattt |
109 |
Q |
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| T |
39119489 |
atcatcaagttgaatgaatttggactgtgacagtaaagatcctctccatttctcaaaaggaatggaaagttccattactataatgagagcaccatgattt |
39119390 |
T |
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| Q |
110 |
ttggatccttttgtggacgcgtttcaaaatgcatgtaattcagttacgacatattagcatcagattaaaataagtgtggtcatttgcctatttttcgatg |
209 |
Q |
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| T |
39119389 |
ttggatccttttgtggacgcgtttcaaaatgcatgtaatgcagatacgacatattagcatcagattcaaataagtgtggtcatttgcctatttttcgatg |
39119290 |
T |
|
| Q |
210 |
gaattcatgattattcactttgtgatttatattagttttatgcctcttatgttgctaagttaattttaatgtgttgtatgtacattttttgcttgacctt |
309 |
Q |
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| T |
39119289 |
gaattcatgattattcactttgtgatttatattagttttatgcctcttatgttgctaagttaattttaatgtgttgtatgtacattttttgcttgacctt |
39119190 |
T |
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| Q |
310 |
atttgatttgagccttgatagaagatatacacccttatttgtattaagtctttaaatttgattagttttttacctcttacctctcaattctgaatctctt |
409 |
Q |
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| T |
39119189 |
atttgatttgagccttgatagaagatatacacccttatttgtattaagtctttaaatttgattagttttttacctcttacctctcaattctgaatctctt |
39119090 |
T |
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| Q |
410 |
tacctcttc |
418 |
Q |
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| T |
39119089 |
tacctcttc |
39119081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 38611701 - 38611762
Alignment:
| Q |
357 |
gtctttaaatttgattagttttttacctcttacctctcaattctgaatctctttacctcttc |
418 |
Q |
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| T |
38611701 |
gtctttaaatttgattagttttttacctcttacctcccaattcttaatgtctttacctcttc |
38611762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 19633834 - 19633871
Alignment:
| Q |
41 |
agtaaagatcctctccatttctcaaaaggaatggaaag |
78 |
Q |
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| T |
19633834 |
agtaaagatcctctccatttctcaaaagaaatggaaag |
19633871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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