View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17955_low_5 (Length: 430)
Name: NF17955_low_5
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17955_low_5 |
 | |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 61 - 415
Target Start/End: Complemental strand, 28740817 - 28740471
Alignment:
| Q |
61 |
tacttgaaaaggaaacaactaccgtcactctcacatctcacaagtcacaacaccgattgggtgagttagaaacattaatttatttgagttagggtttatc |
160 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
28740817 |
tacttgaaaaggaaacaactaccttcactctcaca-------agtcacaacaccgatcgggtgagttagaaacattaatttatttgagttagggttt-tc |
28740726 |
T |
|
| Q |
161 |
aagttgagatggccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatctacgctattgcgtttcc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28740725 |
aagttgagatggccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatctacgctattgcgtttcc |
28740626 |
T |
|
| Q |
261 |
aatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgtatt |
360 |
Q |
| |
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||||| ||| || ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28740625 |
aatgggactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaagatgctcaactctctgcccatgagattgcgtcgcgtatt |
28740526 |
T |
|
| Q |
361 |
tcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
28740525 |
tcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctcttcttg |
28740471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 61 - 415
Target Start/End: Complemental strand, 28637033 - 28636687
Alignment:
| Q |
61 |
tacttgaaaaggaaacaactaccgtcactctcacatctcacaagtcacaacaccgattgggtgagttagaaacattaatttatttgagttagggtttatc |
160 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || |
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|
| T |
28637033 |
tacttgaaaaggaaacaactaccttcactctcaca-------agtcacaacaccgatcgggtgagttagaaacattaatttatttgtgttagggttt-tc |
28636942 |
T |
|
| Q |
161 |
aagttgagatggccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatctacgctattgcgtttcc |
260 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28636941 |
aagttgagatagccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatctatgctattgcgtttcc |
28636842 |
T |
|
| Q |
261 |
aatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgtatt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28636841 |
aatggcactacaatctgcaactgagcttggtgtttttgatgttttgcaaaaagctggaaaagatgctcaactctctgccgatgagattgcgtcgcgtatt |
28636742 |
T |
|
| Q |
361 |
tcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |||||| |||||| |
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|
| T |
28636741 |
tcttgcagcaatcctgatgccccgaaaatgttggatcgcatccttgctcttcttg |
28636687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 210 - 415
Target Start/End: Complemental strand, 28731737 - 28731532
Alignment:
| Q |
210 |
tgaagaaagtttcatacatgctacacaacttatctacgctattgcgtttccaatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaa |
309 |
Q |
| |
|
||||||||||||| || |||||| ||| ||| | || |||| | | | ||||||| ||| || ||||||| | |||||||||||||||||||||||||| |
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| T |
28731737 |
tgaagaaagtttcttatatgctatacagctttgcaactctatggtgctaccaatggtactccattctgcaagtcagcttggtgtttttgatgtgttgcaa |
28731638 |
T |
|
| Q |
310 |
aaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctg |
409 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28731637 |
aaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgttc |
28731538 |
T |
|
| Q |
410 |
ttcttg |
415 |
Q |
| |
|
|||||| |
|
|
| T |
28731537 |
ttcttg |
28731532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 259 - 415
Target Start/End: Complemental strand, 28701097 - 28700941
Alignment:
| Q |
259 |
ccaatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgta |
358 |
Q |
| |
|
||||||| ||| || ||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28701097 |
ccaatggtactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgta |
28700998 |
T |
|
| Q |
359 |
tttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
28700997 |
tttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctcttcttg |
28700941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 274 - 415
Target Start/End: Complemental strand, 28626068 - 28625927
Alignment:
| Q |
274 |
tctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatc |
373 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28626068 |
tctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatc |
28625969 |
T |
|
| Q |
374 |
ctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
28625968 |
ctgatgctcccaaaatgttggatcgcattcttgttcttcttg |
28625927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 275 - 415
Target Start/End: Complemental strand, 28644561 - 28644421
Alignment:
| Q |
275 |
ctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatcc |
374 |
Q |
| |
|
|||||| | |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
28644561 |
ctgcaagtcagcttggtgtatttgatgtgttgcaaaaaactggtaaaggtgctcaactctctgccgatgagattgtgtcgcgtatttcttgcagcaatcc |
28644462 |
T |
|
| Q |
375 |
tgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28644461 |
tgatgctcccaaaatgttggatcgcattcttgctgttcttg |
28644421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 259 - 415
Target Start/End: Complemental strand, 28711999 - 28711843
Alignment:
| Q |
259 |
ccaatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgta |
358 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
28711999 |
ccaatggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtc |
28711900 |
T |
|
| Q |
359 |
tttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28711899 |
tttcctgcaacaatcttgatgctcccaaaatgttggatcgcattcttgctgttcttg |
28711843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 259 - 415
Target Start/End: Complemental strand, 28719346 - 28719190
Alignment:
| Q |
259 |
ccaatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgta |
358 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
28719346 |
ccaatggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtc |
28719247 |
T |
|
| Q |
359 |
tttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28719246 |
tttcctgcaacaatcttgatgctcccaaaatgttggatcgcattcttgctgttcttg |
28719190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 259 - 415
Target Start/End: Complemental strand, 28726988 - 28726832
Alignment:
| Q |
259 |
ccaatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgta |
358 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
28726988 |
ccaatggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtc |
28726889 |
T |
|
| Q |
359 |
tttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
28726888 |
tttcctgcaacaatcttgatgctcccaaaatgttggatcgcattcttgttcttcttg |
28726832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28740898 - 28740840
Alignment:
| Q |
1 |
tgtaaaaccaatgacgtccttatcaatacgataaaaagacaagactgcgccgcatgact |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28740898 |
tgtaaaaccaatgacgtccttatcaatacgataaaaaggcaagactttgccgcatgact |
28740840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 274 - 415
Target Start/End: Original strand, 5216 - 5357
Alignment:
| Q |
274 |
tctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatc |
373 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5216 |
tctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatc |
5315 |
T |
|
| Q |
374 |
ctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5316 |
ctgatgctcccaaaatgttggatcgcattcttgctcttcttg |
5357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 29645770 - 29645863
Alignment:
| Q |
248 |
ctattgcgtttccaatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccga |
341 |
Q |
| |
|
||||||| |||| |||||||| |||| ||||| ||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
29645770 |
ctattgcacttcccatggcactccaatgtgcaattgatcttggtgtttttgaagtgttgcaaaaagccggtaaaggtgctcaactctcggccga |
29645863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 415
Target Start/End: Complemental strand, 49110222 - 49110067
Alignment:
| Q |
260 |
caatggcactacaatctgcaactgagcttggtgtttttgatgtgttgcaaaaagctggtaaagatgctcaactctctgccgatgagattgcgtcgcgtat |
359 |
Q |
| |
|
|||||||||| |||||||| | ||| || || || ||||| || || ||||||||||||| |||| ||| || || |||||||||| || || ||| | |
|
|
| T |
49110222 |
caatggcacttcaatctgctattgaactcggcgtatttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtct |
49110123 |
T |
|
| Q |
360 |
ttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttg |
415 |
Q |
| |
|
|| |||| |||||| ||||| || |||||||| ||||||||||||||| |||||| |
|
|
| T |
49110122 |
ctcctgcaccaatccagatgcacctaaaatgttagatcgcattcttgctcttcttg |
49110067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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