View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17955_low_6 (Length: 411)
Name: NF17955_low_6
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17955_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 5012342 - 5012040
Alignment:
| Q |
18 |
cttttcatctgcaaaattacttccaggagttacgttccctccttgttgatgtgttgcatctaacacatgcctcgcggggtattgagaaggtgttccagca |
117 |
Q |
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| T |
5012342 |
cttttcatctgcaaaattacttccaggagttacgttccctccttgttgatgtgttgcatctaacacatgcctcgcggggtattgagaaggtgttccagca |
5012243 |
T |
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| Q |
118 |
gtattcccaatatatctaacataacgaactggtatttctttgtgatctacctttttgaggataactttttcaaagatgggtgatttactctcaaactgag |
217 |
Q |
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| T |
5012242 |
gtattcccaatatatctagcataacgaactggtatttctttgtgatctacctttttgaggataactttttcaaagatgggtgatttactctcaaactgag |
5012143 |
T |
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| Q |
218 |
gcttaatcggtgcaggttttttgccgtgagctagcggttgagacacccataatgcattgatcggtgatagcttagcaggcctccctctctttcgtggttg |
317 |
Q |
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| T |
5012142 |
tcttaatcggtgcaggttttttgccgtgagctagcggttgagacacccataatgaattgatcggtgatagcttagcaggcctccctctctttcgtggttg |
5012043 |
T |
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| Q |
318 |
tcc |
320 |
Q |
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| T |
5012042 |
tcc |
5012040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 5012039 - 5011994
Alignment:
| Q |
351 |
ttccattttatcttttttgagtgacgaaacttcttgttcaagtata |
396 |
Q |
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| T |
5012039 |
ttccattttatcttttttgagtgacgaaacttcttgttcaagtata |
5011994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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