View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17955_low_9 (Length: 367)

Name: NF17955_low_9
Description: NF17955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17955_low_9
NF17955_low_9
[»] chr4 (12 HSPs)
chr4 (16-364)||(29551900-29552257)
chr4 (191-325)||(7631081-7631215)
chr4 (200-325)||(37397103-37397228)
chr4 (33-222)||(49606446-49606635)
chr4 (23-162)||(36072232-36072371)
chr4 (30-160)||(23185931-23186064)
chr4 (57-322)||(6369355-6369620)
chr4 (117-160)||(53638676-53638719)
chr4 (109-156)||(55398867-55398914)
chr4 (16-120)||(3510529-3510633)
chr4 (115-159)||(12692625-12692669)
chr4 (16-164)||(18905415-18905563)
[»] chr3 (5 HSPs)
chr3 (17-179)||(27036317-27036479)
chr3 (17-179)||(27025076-27025238)
chr3 (16-127)||(3162716-3162827)
chr3 (94-222)||(46282017-46282146)
chr3 (120-179)||(51135472-51135531)
[»] chr5 (8 HSPs)
chr5 (29-229)||(32695670-32695870)
chr5 (115-322)||(36519638-36519845)
chr5 (17-160)||(22910051-22910194)
chr5 (119-222)||(27689097-27689200)
chr5 (19-222)||(15812370-15812570)
chr5 (82-222)||(22416394-22416535)
chr5 (87-179)||(27486677-27486769)
chr5 (112-179)||(41615126-41615193)
[»] chr2 (11 HSPs)
chr2 (16-160)||(25630651-25630795)
chr2 (21-144)||(33946160-33946283)
chr2 (21-126)||(41255466-41255571)
chr2 (106-179)||(32475472-32475545)
chr2 (18-222)||(37126609-37126813)
chr2 (16-52)||(42014776-42014812)
chr2 (17-73)||(2734575-2734631)
chr2 (113-179)||(18964633-18964699)
chr2 (16-134)||(22437020-22437138)
chr2 (16-61)||(38113987-38114032)
chr2 (112-188)||(42014857-42014932)
[»] chr8 (4 HSPs)
chr8 (16-236)||(16796120-16796340)
chr8 (16-134)||(20657375-20657493)
chr8 (97-159)||(21446197-21446259)
chr8 (97-150)||(32108995-32109048)
[»] chr1 (9 HSPs)
chr1 (16-164)||(15248330-15248478)
chr1 (87-227)||(48181297-48181437)
chr1 (116-179)||(43074990-43075053)
chr1 (21-229)||(28638796-28639004)
chr1 (21-220)||(34550399-34550598)
chr1 (16-65)||(15499932-15499981)
chr1 (76-165)||(19440715-19440804)
chr1 (112-188)||(30517100-30517176)
chr1 (112-152)||(43074870-43074910)
[»] scaffold0001 (1 HSPs)
scaffold0001 (21-204)||(425960-426143)
[»] scaffold0048 (2 HSPs)
scaffold0048 (112-222)||(54897-55007)
scaffold0048 (102-160)||(87027-87085)
[»] scaffold0294 (1 HSPs)
scaffold0294 (21-148)||(1011-1135)
[»] chr6 (6 HSPs)
chr6 (19-179)||(20386751-20386911)
chr6 (112-160)||(17521054-17521102)
chr6 (96-152)||(25173013-25173069)
chr6 (97-177)||(33680813-33680893)
chr6 (115-237)||(19626546-19626668)
chr6 (21-73)||(17521122-17521174)
[»] chr7 (4 HSPs)
chr7 (16-179)||(1905722-1905885)
chr7 (67-162)||(18043974-18044066)
chr7 (115-179)||(1378728-1378792)
chr7 (87-179)||(25531337-25531429)
[»] scaffold0210 (1 HSPs)
scaffold0210 (17-157)||(6936-7076)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 29551900 - 29552257
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  29551900 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagccggaagagtgcagttcaatcagatgatgctcatgaatgacg 29551999  T
Q  116 acgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaa 215  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552000 acgacgtgagaaccatgttctcgatatttggtcagtacagtactaaaggaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaa 29552099  T
Q  216 aagtttgctctggcttaggaacaatgaagatattagggttctactcgaggaaccagatgaagaacttaattgagctgatcaataatctgttatgttttat 315  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552100 aagtttgctccggcttaggaacaatgaagatattagggttctactcgaggaaccagatgaagaacttaattgagctgatcaataatctgttatgttttat 29552199  T
Q  316 ttta---------ttatgttgttaaatcacatctatgatgtatttgaaattgttatac 364  Q
    ||||         ||| |||||||||||||||||||||||||||||||||||||||||    
T  29552200 tttattacatgttttacgttgttaaatcacatctatgatgtatttgaaattgttatac 29552257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 7631081 - 7631215
Alignment:
Q  191 tcagatttattgaagaaaatcagaaaagtttgctctggcttaggaacaatgaagatattagggttctactcgaggaaccagatgaagaacttaattgagc 290  Q
    |||||| | ||||||||| ||||||||||||| || | || |  ||| ||||||| ||||| | ||||||  |||||||| | |||||| |||||| |||    
T  7631081 tcagatatgttgaagaaattcagaaaagtttgttccgactcaaaaactatgaagagattagagctctactaaaggaaccatacgaagaagttaatttagc 7631180  T
Q  291 tgatcaataatctgttatgttttattttattatgt 325  Q
    ||||| || || |||||||||||||||||||||||    
T  7631181 tgatccatgatatgttatgttttattttattatgt 7631215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 37397103 - 37397228
Alignment:
Q  200 ttgaagaaaatcagaaaagtttgctctggcttaggaacaatgaagatattagggttctactcgaggaaccagatgaagaacttaattgagctgatcaata 299  Q
    ||||||||| ||||||||||||| ||||| | ||||||  |||||| || |||| ||| ||  |||||| ||| ||| || |||||| || ||||| ||     
T  37397103 ttgaagaaattcagaaaagtttgttctggttcaggaactgtgaagagatcagggctctgcttaaggaacaagacgaataagttaatttagttgatccatg 37397202  T
Q  300 atctgttatgttttattttattatgt 325  Q
    ||||||||||||||||||||||||||    
T  37397203 atctgttatgttttattttattatgt 37397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 49606635 - 49606446
Alignment:
Q  33 ggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatg 132  Q
    ||||||||||||||||||||  |  |||| ||| ||||||||||| ||  ||| |||||  | ||||| ||| | |||||||||||||||||||||||||    
T  49606635 ggtggatggtgttgagtatcgacaaccatcgaccgactcagtcgggagtatgcggttcagccggatgaagcttatgaatgacgacgacgtgagaaccatg 49606536  T
Q  133 ttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaagtttg 222  Q
    || | ||| |||||||| |||| ||||| | |  | |||||||||||  |||| ||  |||||| | ||||| ||| ||| |||||||||    
T  49606535 ttctcgatctttggtcaatacaatactagagggtcgatcgagttggacacttcgttggtcagatctgttgaacaaattcaaaaaagtttg 49606446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 36072371 - 36072232
Alignment:
Q  23 acacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgacgt 122  Q
    ||||| ||||| ||||  ||||||||||||  ||||||| ||   |||| ||||||||||||||| ||| ||| ||||  |||| ||| |||||||| |     
T  36072371 acacagggaggatggaaagtgttgagtatcaacgtccatcgatcaactcggtcggaagagtgcagctcagtcatatgaaactcaagaacgacgacgatgc 36072272  T
Q  123 gagaaccatgttttagatatttggtcagtacagtactaaa 162  Q
    |||||||||||||| |||||||||||  |||| |||||||    
T  36072271 gagaaccatgttttcgatatttggtccatacaatactaaa 36072232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 23186064 - 23185931
Alignment:
Q  30 gagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaa---tgacgacgacgtgaga 126  Q
    ||||||||||||||||||||||   ||||| |  || |||||||| || || ||||||||||  ||||||| ||||  |||   |||||||||||| |||    
T  23186064 gagggtggatggtgttgagtattgacgtccgtccaccgactcagttgggagtgtgcagttcagccagatgaagctcgtgaacgatgacgacgacgttaga 23185965  T
Q  127 accatgttttagatatttggtcagtacagtacta 160  Q
    |||||||| | ||| |||| ||||||||||||||    
T  23185964 accatgttctcgatctttgatcagtacagtacta 23185931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 322
Target Start/End: Original strand, 6369355 - 6369620
Alignment:
Q  57 tccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagt 156  Q
    ||||| ||| |||||||  |||||||||||||  |  || |||| ||||||||| || |||||||||||||| ||||| |  |||||||| ||||||| |    
T  6369355 tccatcgaccgactcagctggaagagtgcagtcaacccaaatgaagctcaggaacgatgacgacgtgagaactatgttctccatatttgggcagtacaat 6369454  T
Q  157 actaaatgaac-aatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaagtttgctctggcttaggaacaatgaagatattagggtt 255  Q
    |||||| ||||  | ||||||| |   ||||||  |||||| | |||||  || ||||||||||||| || ||| ||  ||||| ||||| | ||||| |    
T  6369455 actaaa-gaactgaccgagttgaacgtttcattggtcagatctgttgaattaattcagaaaagtttgatccggcctataaacaacgaagagactagggct 6369553  T
Q  256 ctactcgaggaaccagatgaagaacttaattgagctgatcaataatctgttatgttttattttatta 322  Q
    || || ||||||| ||| || ||| ||| || || |||||  | | |||||||||||| ||||||||    
T  6369554 ctgctggaggaactagacgatgaaattagtttagatgatccgtgaactgttatgttttgttttatta 6369620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 53638676 - 53638719
Alignment:
Q  117 cgacgtgagaaccatgttttagatatttggtcagtacagtacta 160  Q
    |||||||||||||||| | || ||||||||||||||||||||||    
T  53638676 cgacgtgagaaccatgatctaaatatttggtcagtacagtacta 53638719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 55398867 - 55398914
Alignment:
Q  109 aatgacgacgacgtgagaaccatgttttagatatttggtcagtacagt 156  Q
    |||||| ||||||||||||||||||| |  ||||||||||||||||||    
T  55398867 aatgacaacgacgtgagaaccatgttctttatatttggtcagtacagt 55398914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 3510633 - 3510529
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    ||||||||||||||||||||| | |||||||  ||||  ||||||| ||  || |||| ||| ||| | || ||||  ||||||||||||| ||| ||||    
T  3510633 cacagagacacaaggagggtgaacggtgttggatatcgacgtccatcgatcgaatcagccgggagattacaattcagccagatgatgctcaagaacgacg 3510534  T
Q  116 acgac 120  Q
    |||||    
T  3510533 acgac 3510529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 12692625 - 12692669
Alignment:
Q  115 gacgacgtgagaaccatgttttagatatttggtcagtacagtact 159  Q
    |||| ||||||||||||||| | ||| ||||||||||||||||||    
T  12692625 gacggcgtgagaaccatgttctcgatctttggtcagtacagtact 12692669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 18905563 - 18905415
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    |||| ||||||||||| ||||||   ||||||||||| ||||||||  |  |||||||  |||||  | |||||||  || |||||| |||| || ||||    
T  18905563 cacaaagacacaaggatggtggacattgttgagtatcatcgtccatcaatcgactcagatggaagcatccagttcatccaaatgatgttcagtaacgacg 18905464  T
Q  116 acgacgtgagaaccatgttttagatatttggtcagtacagtactaaatg 164  Q
    || |  |||||| ||||||||  |||||| ||||| ||| |||||||||    
T  18905463 acaatatgagaatcatgttttcaatatttagtcagcacactactaaatg 18905415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 27036479 - 27036317
Alignment:
Q  17 acagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacga 116  Q
    ||||||||||| |||| ||| |||||||||||||||  |||| || ||| |||||||| ||||| |||| ||||| || ||||| ||||| ||| |||||    
T  27036479 acagagacacacggagagtgtatggtgttgagtatcggcgtctatcgaccgactcagttggaagtgtgcggttcagtcggatgaagctcatgaacgacga 27036380  T
Q  117 cgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    |||||||||||||||||| | ||| ||| ||||||| ||||| | | | |||||| |||||||    
T  27036379 cgacgtgagaaccatgttctcgatcttttgtcagtatagtacaagagggacaatcaagttgga 27036317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 27025238 - 27025076
Alignment:
Q  17 acagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacga 116  Q
    |||||||||||  ||| ||| |||||||||||||||  |||| || ||| ||||||||  |||| |||| ||||| || ||||| ||||| ||| |||||    
T  27025238 acagagacacacagagagtgtatggtgttgagtatcgacgtctatcgaccgactcagttagaagtgtgcggttcagtcggatgaagctcatgaacgacga 27025139  T
Q  117 cgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    |||||||||||||||||| | ||| ||| ||||||| ||||| | | | |||||| |||||||    
T  27025138 cgacgtgagaaccatgttctcgatcttttgtcagtatagtacaagagggacaatcaagttgga 27025076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 3162827 - 3162716
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    |||| ||||||||||||||||||  ||||||||||||  ||| ||| || ||| |||| ||||||| | |||||||| ||||||||||| | ||| |||     
T  3162827 cacatagacacaaggagggtggacagtgttgagtatcgacgttcatggattgaatcagccggaagattccagttcaaccagatgatgctaaagaacgaca 3162728  T
Q  116 acgacgtgagaa 127  Q
     |||||||||||    
T  3162727 gcgacgtgagaa 3162716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 46282017 - 46282146
Alignment:
Q  94 cagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattca 193  Q
    ||||||| ||| |||||  |||| ||| |||||| |||||| | ||||||||||||||||| ||| ||| || |||||||||||||  |||| ||| |||    
T  46282017 cagatgaagcttaggaacaacgatgacatgagaatcatgttctcgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtca 46282116  T
Q  194 gat-ttattgaagaaaatcagaaaagtttg 222  Q
     || || ||||||| | |||||||||||||    
T  46282117 tatctttttgaagatattcagaaaagtttg 46282146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 51135472 - 51135531
Alignment:
Q  120 cgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    ||||||||||||||| | |||| |||||||||||||| ||||| || |||||||||||||    
T  51135472 cgtgagaaccatgttcttgatagttggtcagtacagttctaaaggaccaatcgagttgga 51135531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 32695870 - 32695670
Alignment:
Q  29 ggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgacgtgagaac 128  Q
    |||||||||| |||||| ||||||  ||||||| ||| |||||| |||  |  |||| |||||||| | ||| ||||| ||||||||||||||||||||     
T  32695870 ggagggtggacggtgttaagtatcgacgtccatcgaccgactcattcgagaatgtgcggttcaatcggttgaagctcatgaatgacgacgacgtgagaat 32695771  T
Q  129 catgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaagtttgctctgg 228  Q
    | |||| | ||| ||||||||||||| ||||||| || | |||||||||||  |||  ||  |||||| | ||||| ||| ||||||||||||| |||||    
T  32695770 cgtgttctcgatctttggtcagtacaatactaaaggaccgatcgagttggacgctttgttggtcagatctgttgaacaaattcagaaaagtttgatctgg 32695671  T
Q  229 c 229  Q
    |    
T  32695670 c 32695670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 322
Target Start/End: Original strand, 36519638 - 36519845
Alignment:
Q  115 gacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcaga 214  Q
    ||||| |||||||||||||| | ||||||||||||||||| ||||||| ||   |||||||||||  |||| ||  ||| || | ||||||||| |||||    
T  36519638 gacgatgtgagaaccatgttctcgatatttggtcagtacaatactaaaggactgatcgagttggacgcttcgttggtcaaatctgttgaagaaattcaga 36519737  T
Q  215 aaagtttgctctggcttaggaacaatgaagatattagggttctactcgaggaaccagatgaagaacttaattgagctgatcaataatctgttatgtttta 314  Q
    |||||||| ||   | ||||||| | ||||| |   ||| |||||| ||||||| ||| |||||| ||| || |||||||   | |||| ||||||||||    
T  36519738 aaagtttgatccaacctaggaactacgaagagaactgggctctactggaggaactagacgaagaaattagtttagctgattcgtgatctattatgtttta 36519837  T
Q  315 ttttatta 322  Q
    ||||||||    
T  36519838 ttttatta 36519845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 22910051 - 22910194
Alignment:
Q  17 acagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacga 116  Q
    ||||||||||| ||||||||||||||||||||||||  |||   | |||  ||||||  || ||||||| | ||| || ||||| ||||| ||| |||||    
T  22910051 acagagacacacggagggtggatggtgttgagtatcgacgtttgtcgaccaactcagctgggagagtgcggctcactcggatgaagctcatgaacgacga 22910150  T
Q  117 cgacgtgagaaccatgttttagatatttggtcagtacagtacta 160  Q
    |||||||||||||||||| |  || |||||||| | ||||||||    
T  22910151 cgacgtgagaaccatgttctccatctttggtcaattcagtacta 22910194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 27689097 - 27689200
Alignment:
Q  119 acgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaag 218  Q
    |||||||||||||||| | ||| ||||||||||||||||||| | || | ||| |||||||  |||||||  || ||||| ||||| ||| |||||||||    
T  27689097 acgtgagaaccatgttctcgatctttggtcagtacagtactataggaccgatcaagttggacgcttcattggtctgatttgttgaacaaattcagaaaag 27689196  T
Q  219 tttg 222  Q
    ||||    
T  27689197 tttg 27689200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 15812370 - 15812570
Alignment:
Q  19 agagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacg 118  Q
    ||||||||| ||||||||||||||||| ||||||  | ||||| ||  ||||||| | | || |||| |||||  | ||||| ||| | |||   || ||    
T  15812370 agagacacacggagggtggatggtgttcagtatcgacatccatcgatcgactcagccaggagtgtgcggttcacccggatgaagcttatgaa---cggcg 15812466  T
Q  119 acgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaag 218  Q
    ||||||||||||| || | ||| |||||||| |||||||||| | || | |||||||||||  |||| ||  |||||| | ||||| ||| ||| |||||    
T  15812467 acgtgagaaccatattcttgatctttggtcaatacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaag 15812566  T
Q  219 tttg 222  Q
    ||||    
T  15812567 tttg 15812570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 22416394 - 22416535
Alignment:
Q  82 gtgcagttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagt 181  Q
    |||| ||||| || ||||| ||||| ||| || || ||||||||||||||||| |  | || ||||||||||||||||||| || |  ||||||||||      
T  22416394 gtgcggttcagtcggatgaagctcaagaacgaagatgacgtgagaaccatgttctcaaaatgtggtcagtacagtactaaaggaccggtcgagttggacg 22416493  T
Q  182 cttcattattcagatttattgaagaaaatcag-aaaagtttg 222  Q
    |||| ||  |||||| | ||||||||| |||| |||||||||    
T  22416494 cttcgttggtcagatctgttgaagaaattcagcaaaagtttg 22416535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 27486769 - 27486677
Alignment:
Q  87 gttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    |||||| ||||||| | ||| |||  ||||| ||||| |||||||||| | |||||||||| |||||| || ||||||| | |||||||||||    
T  27486769 gttcaaccagatgaagttcacgaacaacgacaacgtgggaaccatgttctcgatatttggttagtacaatattaaatgaccgatcgagttgga 27486677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 41615126 - 41615193
Alignment:
Q  112 gacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    |||||||||||||||||||||||||   | ||||||||| ||| ||||| |||| | |||||||||||    
T  41615126 gacgacgacgtgagaaccatgttttctgtctttggtcagcacattactagatgaccgatcgagttgga 41615193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 25630651 - 25630795
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    ||||||||| || |||||||||| |||||||||||||   |||||| ||| | ||||| |||||| |||||||||| |  ||||| |||||  || ||||    
T  25630651 cacagagacgcacggagggtggacggtgttgagtatcaatgtccatcgaccggctcagccggaagtgtgcagttcagttggatgaagctcataaacgacg 25630750  T
Q  116 acgacgtgagaaccatgttttagatatttggtcagtacagtacta 160  Q
    ||| ||||| ||||||||| | ||| |||||||||||||||||||    
T  25630751 acggcgtgataaccatgttctcgatctttggtcagtacagtacta 25630795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 33946283 - 33946160
Alignment:
Q  21 agacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgac 120  Q
    ||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| || |||| |||||  | ||||| ||||| ||| ||||||||     
T  33946283 agacacacggagggtggatagtgttgagtatcgatgtccatcgactgactcagtcgggagtgtgcggttcagccggatgaagctcatgaacgacgacgat 33946184  T
Q  121 gtgagaaccatgttttagatattt 144  Q
    |||||||||||||| | |||||||    
T  33946183 gtgagaaccatgttctcgatattt 33946160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 41255571 - 41255466
Alignment:
Q  21 agacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgac 120  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||| |||||||  ||||||||||||||||  |||||||  |||| ||| ||||| ||     
T  41255571 agacacaaggagggtggatagtgttgagtatcgacgtccattgaccgactcagctggaagagtgcagttcacccagatgaatctcatgaacgacgatgat 41255472  T
Q  121 gtgaga 126  Q
    ||||||    
T  41255471 gtgaga 41255466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 32475545 - 32475472
Alignment:
Q  106 aggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    ||||| ||||||||||||||||||||||| | ||||||| || |||||| ||||||| || | |||||||||||    
T  32475545 aggaacgacgacgacgtgagaaccatgttatcgatattttgttagtacattactaaaggaccgatcgagttgga 32475472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 37126609 - 37126813
Alignment:
Q  18 cagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgac 117  Q
    |||||| ||| ||||||||||||||||||||||||  |||| || |||  |||||  | | || |||| |||||  |  |||| ||||| ||| ||||||    
T  37126609 cagagaaacacggagggtggatggtgttgagtatcgacgtctatcgacctactcatccaggagtgtgcggttcagccgaatgaagctcatgaacgacgac 37126708  T
Q  118 gacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaa 217  Q
    |||||||||||||| || | ||| ||| || |||||||||||| | |  | |||||||||||  |||| ||  ||| || | ||||| ||| ||||||||    
T  37126709 gacgtgagaaccattttctcgatctttagttagtacagtactagagggtcgatcgagttggacgcttcgttggtcacatctgttgaacaaattcagaaaa 37126808  T
Q  218 gtttg 222  Q
    |||||    
T  37126809 gtttg 37126813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 42014776 - 42014812
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatc 52  Q
    |||||||||||||||||||||||||||||||||||||    
T  42014776 cacagagacacaaggagggtggatggtgttgagtatc 42014812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 2734631 - 2734575
Alignment:
Q  17 acagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcag 73  Q
    |||||||||||  |||||||||||||||||||||||  | ||||| |||||||||||    
T  2734631 acagagacacatagagggtggatggtgttgagtatcgacctccatcgactgactcag 2734575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 18964699 - 18964633
Alignment:
Q  113 acgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    |||||||||||||||||||||| |   | ||||||||| ||||||||| ||||  ||||||||||||    
T  18964699 acgacgacgtgagaaccatgttctctgtctttggtcagcacagtactagatgactaatcgagttgga 18964633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 22437138 - 22437020
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    |||| |||||||||| ||||| |   ||||||||||| || |||||  |||||||||   ||||| || |||||||   |||||| ||||| ||| |||     
T  22437138 cacaaagacacaaggtgggtgaacaatgttgagtatcgtcttccatcaactgactcatatggaagcgtccagttcaccaagatgaagctcaagaacgaca 22437039  T
Q  116 acgacgtgagaaccatgtt 134  Q
    |||||||||||||||||||    
T  22437038 acgacgtgagaaccatgtt 22437020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 38114032 - 38113987
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccat 61  Q
    |||| ||||||||||| |||||| |||||||||||||| |||||||    
T  38114032 cacaaagacacaaggaaggtggagggtgttgagtatctacgtccat 38113987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 42014857 - 42014932
Alignment:
Q  112 gacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcatt 188  Q
    ||||| ||||||||||||||| | |  |||||||| ||||||||||||||| || | |||||||||||  |||||||    
T  42014857 gacgaagacgtgagaaccatgatctcaatatttgg-cagtacagtactaaaggatcgatcgagttggacgcttcatt 42014932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 16796120 - 16796340
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    ||||||||||  ||||||||||| ||||||||||||   |||||||  | ||||||||  || |  |||| ||| | |||||||| ||||| ||| ||||    
T  16796120 cacagagacatgaggagggtggacggtgttgagtattgacgtccatctattgactcagcagggactgtgcggttaagtcagatgaagctcatgaacgacg 16796219  T
Q  116 acgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaa 215  Q
    || || |||||| |||||| | ||| |||| ||||||| |||| |||  ||| |||||||||||  |||| ||  |||||| | ||||||||| ||| ||    
T  16796220 acaacatgagaaacatgttctcgatctttgctcagtacggtacaaaagcaacgatcgagttggacgcttcgttggtcagatctgttgaagaaattcataa 16796319  T
Q  216 aagtttgctctggcttaggaa 236  Q
    ||||||| || ||||||||||    
T  16796320 aagtttgatccggcttaggaa 16796340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 20657375 - 20657493
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    |||||||||||||||||| ||||  ||||||| |||| ||||||||| || |||| ||   |||| || |||||||  || |||| ||||| ||| ||||    
T  20657375 cacagagacacaaggaggatggagagtgttgattatcgtcgtccattaaccgacttagatcgaagcgtccagttcacccaaatgaagctcaagaacgacg 20657474  T
Q  116 acgacgtgagaaccatgtt 134  Q
    |||||||||||||||||||    
T  20657475 acgacgtgagaaccatgtt 20657493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 21446259 - 21446197
Alignment:
Q  97 atgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtact 159  Q
    |||| |||| |||| ||||| ||| ||||||||||||| | ||||||| ||||||||||||||    
T  21446259 atgaagctcgggaacgacgaagacatgagaaccatgttcttgatatttagtcagtacagtact 21446197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 32109048 - 32108995
Alignment:
Q  97 atgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcag 150  Q
    |||||||||| ||| |||||||||||||| | |||||| | |||||||||||||    
T  32109048 atgatgctcaagaacgacgacgacgtgaggagcatgttctcgatatttggtcag 32108995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 15248478 - 15248330
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    |||||||| |||||||||||||||| |||||||||||  | |||||  |    |||| || ||  ||||||||| | |||||||| ||||| ||| |||     
T  15248478 cacagagatacaaggagggtggatgatgttgagtatcgacatccatcaatcagctcaatcagagtagtgcagtttagtcagatgaagctcatgaacgaca 15248379  T
Q  116 acgacgtgagaaccatgttttagatatttggtcagtacagtactaaatg 164  Q
    | ||||||||||||||||||| ||||||||| || | ||||||||||||    
T  15248378 atgacgtgagaaccatgttttcgatatttggccaatgcagtactaaatg 15248330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 48181297 - 48181437
Alignment:
Q  87 gttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttca 186  Q
    |||||||  ||||| ||| ||||| | ||| ||||| ||||||||||| | |||||||||| |||||| ||||||| || | |||||||||||  || |     
T  48181297 gttcaattggatgaagcttaggaacgccgatgacgtaagaaccatgttctcgatatttggttagtacaatactaaaggatcgatcgagttggacgctacg 48181396  T
Q  187 ttattcagatttattgaagaaaatcagaaaagtttgctctg 227  Q
     |  |||||||||||||||||| ||||||||||||| ||||    
T  48181397 gttgtcagatttattgaagaaattcagaaaagtttgatctg 48181437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 43075053 - 43074990
Alignment:
Q  116 acgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    ||||||||||||||||||| | ||||||| ||||||| ||| | |||||| |||||||||||||    
T  43075053 acgacgtgagaaccatgttctcgatatttagtcagtatagttcgaaatgaccaatcgagttgga 43074990  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 28638796 - 28639004
Alignment:
Q  21 agacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgac 120  Q
    ||||||||||||||||||||||||| |||||   ||| ||||||| ||||||| |||||  |||  |||||  |  ||||  ||| ||||  | ||||||    
T  28638796 agacacaaggagggtggatggtgttcagtattgacgtacattgaccgactcagccggaactgtgtggttcagccgaatgaatctcgggaacaatgacgac 28638895  T
Q  121 gtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaagtt 220  Q
    |||| |||||| |  | ||| |||||  |||||||||||||| || ||||||| |||||  |||| ||  ||| || | ||||||||| ||| |||| ||    
T  28638896 gtgaaaaccatctcattgatctttggcaagtacagtactaaaggaccaatcgatttggacgcttcgttggtcatatgtgttgaagaaattcataaaaatt 28638995  T
Q  221 tgctctggc 229  Q
    || ||||||    
T  28638996 tgatctggc 28639004  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 34550598 - 34550399
Alignment:
Q  21 agacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgac 120  Q
    ||||||| ||||| |||| |||||||||||||  || |||||| | ||||||| | | || |||| ||| |  | |||||  |||| ||| ||||||||     
T  34550598 agacacacggaggttggacggtgttgagtatcgacgcccattgtccgactcagcccggagtgtgcggtttagccggatgaatctcatgaacgacgacgat 34550499  T
Q  121 gtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaagtt 220  Q
    |||||||||||||| |  || ||||| || |||| ||||| | || |||||||||||||  |||| ||  ||| |||| ||||| ||| ||| |||||||    
T  34550498 gtgagaaccatgttctcaatctttggccaatacaatactagaggatcaatcgagttggacgcttcgttggtcaaatttgttgaacaaattcaaaaaagtt 34550399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 15499981 - 15499932
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgac 65  Q
    |||| |||||| ||||||||||| |||||||||||||  |||||||||||    
T  15499981 cacaaagacactaggagggtggacggtgttgagtatcgacgtccattgac 15499932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 19440715 - 19440804
Alignment:
Q  76 ggaagagtgcagttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatga 165  Q
    ||||| || |||||||  || |||| |||||| ||||||||| |||||||||  ||| | |  ||||||||||||||||| |||||||||    
T  19440715 ggaagcgtccagttcacccatatgaagctcagaaatgacgacaacgtgagaataatgctctcaatatttggtcagtacagaactaaatga 19440804  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 30517100 - 30517176
Alignment:
Q  112 gacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcatt 188  Q
    |||||||||||||||||||| || ||  | |||||||| |||||||||| | || | |||||||||||  |||||||    
T  30517100 gacgacgacgtgagaaccatcttctatgtctttggtcaatacagtactagaggatcgatcgagttggacgcttcatt 30517176  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 43074910 - 43074870
Alignment:
Q  112 gacgacgacgtgagaaccatgttttagatatttggtcagta 152  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  43074910 gacgacgacgtgagaaccatgttcttgatatttagtcagta 43074870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 425960 - 426143
Alignment:
Q  21 agacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgac 120  Q
    |||||||  |||||||||||||||||||||||  ||||| | || |||||||||||| || |||| |||||  | ||||| ||||| ||| || |||||     
T  425960 agacacacagagggtggatggtgttgagtatcgacgtccgtcgattgactcagtcgggagtgtgcggttcagccggatgaagctcatgaacgatgacgaa 426059  T
Q  121 gtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaa 204  Q
    || ||||||||||| | ||| |||||| |||| ||||||  | |  | ||||||||||| ||||| ||  |||||||| |||||    
T  426060 gttagaaccatgttctcgatctttggttagtaaagtactggagggtcgatcgagttggattcttcgttggtcagatttgttgaa 426143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 55007 - 54897
Alignment:
Q  112 gacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatc 211  Q
    |||||||||||||| |||||||| | ||| |||||||||||||||| || | |  |||||||||||||  |||||||  |||||| | ||||| ||| ||    
T  55007 gacgacgacgtgaggaccatgttcttgatctttggtcagtacagtaatagagggtcaatcgagttggacgcttcattggtcagatatgttgaacaaattc 54908  T
Q  212 agaaaagtttg 222  Q
    |||||||||||    
T  54907 agaaaagtttg 54897  T

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Target: scaffold0048; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 87027 - 87085
Alignment:
Q  102 gctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtacta 160  Q
    ||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  87027 gctcatgaacgacgacgacgtgagaaccatgttcttgatatttggtcagtacagtacta 87085  T

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Target: scaffold0294 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 1011 - 1135
Alignment:
Q  21 agacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgac 120  Q
    ||||||||| ||||||||   ||||| |||||  ||||||||||  ||||||||||| ||| |||||||||  ||||||||||||| ||   ||||||||    
T  1011 agacacaagaagggtggacaatgttgggtatcgacgtccattgatcgactcagtcgggagattgcagttcatccagatgatgctcacga---acgacgac 1107  T
Q  121 gtgagaaccatgttttagatatttggtc 148  Q
    ||||| | |||||| | |||||||||||    
T  1108 gtgaggatcatgttcttgatatttggtc 1135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 20386751 - 20386911
Alignment:
Q  19 agagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacg 118  Q
    |||||||||||||| ||||| | | |||||||||   |||||| |||||||||||| ||||  |||| ||||   | |||||  ||| | || |||||||    
T  20386751 agagacacaaggagagtggacgatcttgagtatcgatgtccatcgactgactcagttggaactgtgcggttcggccggatgaatctcggaaacgacgacg 20386850  T
Q  119 acgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    |||||||||||||||| | ||| |||||| |||||| ||| ||| || | |||||||||||    
T  20386851 acgtgagaaccatgttctcgatctttggttagtacattaccaaaggaccgatcgagttgga 20386911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 17521102 - 17521054
Alignment:
Q  112 gacgacgacgtgagaaccatgttttagatatttggtcagtacagtacta 160  Q
    ||||||||||||||||||||||| | ||| |||| ||||||||||||||    
T  17521102 gacgacgacgtgagaaccatgttctcgatctttgttcagtacagtacta 17521054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 25173069 - 25173013
Alignment:
Q  96 gatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagta 152  Q
    ||||| ||||| ||||||||||||||||||||| ||||| | ||| |||||||||||    
T  25173069 gatgaagctcatgaatgacgacgacgtgagaacgatgttctcgatctttggtcagta 25173013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 33680813 - 33680893
Alignment:
Q  97 atgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttg 177  Q
    |||| ||||||| ||||||| || |||| ||||||||| | ||||||||||||| | ||||||||| || |||| ||||||    
T  33680813 atgaagctcagggatgacgatgatgtgaaaaccatgttattgatatttggtcagaatagtactaaaggaccaattgagttg 33680893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 19626668 - 19626546
Alignment:
Q  115 gacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttggagtcttcattattcagatttattgaagaaaatcaga 214  Q
    |||||||||||||||||||| | |||  |||||| ||||||||||| | |  | |||||||||||  |||| ||  |||||| | ||||| ||| ||| |    
T  19626668 gacgacgtgagaaccatgttctcgatcattggtctgtacagtactagagggtcgatcgagttggacgcttcgttggtcagatctgttgaacaaattcata 19626569  T
Q  215 aaagtttgctctggcttaggaac 237  Q
    |||||||| || ||| |||||||    
T  19626568 aaagtttgatccggcctaggaac 19626546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 17521174 - 17521122
Alignment:
Q  21 agacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcag 73  Q
    ||||||| ||||||||||| ||||||||||||  ||||||| |||||| ||||    
T  17521174 agacacacggagggtggattgtgttgagtatcgacgtccatcgactgagtcag 17521122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 1905722 - 1905885
Alignment:
Q  16 cacagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacg 115  Q
    |||||||||||| |||||||||| |||||||||||||  ||||||||||  ||||||||| | || |||  |||||  ||||||| | ||  ||| |||     
T  1905722 cacagagacacacggagggtggacggtgttgagtatcgacgtccattgatcgactcagtcaggagtgtgtggttcagccagatgaagttcgtgaacgaca 1905821  T
Q  116 acgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    || || ||| ||||||||| | ||| |||||||| |||| ||||| | || | |||||||||||    
T  1905822 acaacatgataaccatgttctcgatctttggtcattacaatactagaggaccgatcgagttgga 1905885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 18044066 - 18043974
Alignment:
Q  67 gactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaa 162  Q
    |||||||||| ||||||||| ||||  || |||| |||||||||   ||||||||||| |||||| || | ||||||| ||||||||| |||||||    
T  18044066 gactcagtcgaaagagtgcatttcagccaaatgaagctcaggaa---cgacgacgtgaaaaccatattctcgatattttgtcagtacaatactaaa 18043974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 1378792 - 1378728
Alignment:
Q  115 gacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    ||||| |||||||||||||| | ||| ||||||||||||||||||| | || ||||| |||||||    
T  1378792 gacgaggtgagaaccatgttctcgatctttggtcagtacagtactagaggaccaatcaagttgga 1378728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 25531429 - 25531337
Alignment:
Q  87 gttcaatcagatgatgctcaggaatgacgacgacgtgagaaccatgttttagatatttggtcagtacagtactaaatgaacaatcgagttgga 179  Q
    ||||| |||||||| | ||||||| || |||||||| | ||||||||| | |||||||||||| |||| | || || |||  |||||||||||    
T  25531429 gttcactcagatgaagttcaggaacgatgacgacgtcataaccatgttctcgatatttggtcaatacaatgctgaaggaaggatcgagttgga 25531337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 6936 - 7076
Alignment:
Q  17 acagagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagtcggaagagtgcagttcaatcagatgatgctcaggaatgacga 116  Q
    ||||||||||  |||  |||||| || |||||||||  ||||  | |||||||||| |||| || |||| |||||    ||||| ||||| ||| |||||    
T  6936 acagagacacgcggatcgtggattgtattgagtatcgacgtctgtcgactgactcaatcgggagtgtgcggttcatctggatgaagctcatgaacgacga 7035  T
Q  117 cgacgtgagaaccatgttttagatatttggtcagtacagta 157  Q
     || |||||||||||||| | ||| |||||| |||||||||    
T  7036 ggatgtgagaaccatgttctcgatctttggttagtacagta 7076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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