View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_high_13 (Length: 348)
Name: NF17956_high_13
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 36453559 - 36453256
Alignment:
| Q |
18 |
atgaccagccactgatttaaaaagaaaaaggggcgttacttaataaacactccacatatttattcattcattcaacccttacaca-cacata-tttttta |
115 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
36453559 |
atgaccagccactaattgaaaaagaaaaaggggcgttacttaataaacactccacgtatttattcattcattcaacccttacacaccacatattttttta |
36453460 |
T |
|
| Q |
116 |
ctctttaaccagtacagaaaggtagggaaccatatatgtgcctatgccatgatacacagttccatacactaggaaggcaaccatatatactaattcatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| | |||||| |
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| T |
36453459 |
ctctttaaccagtacagaaaggtagggaaccatataggtgcctatgccatgatacatagttccatacactag------ttccat--------aatcatat |
36453374 |
T |
|
| Q |
216 |
ataactaaaacttgatgacctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaatttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36453373 |
ataactaaaacttgatgacctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaatttt |
36453274 |
T |
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| Q |
316 |
cagaccctggtgcctttg |
333 |
Q |
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|||||||||||||||||| |
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| T |
36453273 |
cagaccctggtgcctttg |
36453256 |
T |
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