View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17956_high_17 (Length: 305)
Name: NF17956_high_17
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 45175852 - 45175571
Alignment:
| Q |
1 |
taaattttgatcaattttttgtgcatgtttacttttcttagtttgtctctcttattgtggtattcctatattgattgttgactgtcgagtgatttagagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
45175852 |
taaattttgatcaattttttgtgcatgtttacttttcttagtttgtctctcttattgtggtgttcctatattgattgt-------cgagtgatttagagt |
45175760 |
T |
|
| Q |
101 |
ataatttaggtgggtttgtttggagatttcttattatttggtgttcctatattgattgtttgaagtcttctttcaagcaaaagcaaatccagaaagtagt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45175759 |
ataatttaggtgggtttgtttgaagatttttgattgtttaatgttcctatattgattatttgaagtcttctttcaagcaaaagcaaatccataaagtagt |
45175660 |
T |
|
| Q |
201 |
gatagtaaattcatgagatttctggtaaatttagtctacttatttaattgatttatagggtatatatacaatgggaattagttaccttt |
289 |
Q |
| |
|
|||| | || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
45175659 |
gataatgaaatcatgagatttctggtaaatttagtctacttatttaattgatttatggggtatatatacaataggaattagttaccttt |
45175571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 39134686 - 39134645
Alignment:
| Q |
87 |
gagtgatttagagtataatttaggtgggtttgtttggagattt |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39134686 |
gagtgatttagagtataatttaggt-ggtttatttggagattt |
39134645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 46293681 - 46293709
Alignment:
| Q |
29 |
ttacttttcttagtttgtctctcttattg |
57 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46293681 |
ttacttttcttagtttgtctctcttattg |
46293709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 20987360 - 20987319
Alignment:
| Q |
87 |
gagtgatttagagtataatttaggtgggtttgtttggagattt |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
20987360 |
gagtgatttagagtataatttaggt-ggtttatttggagattt |
20987319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 48731607 - 48731635
Alignment:
| Q |
29 |
ttacttttcttagtttgtctctcttattg |
57 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48731607 |
ttacttttcttagtttgtctctcttattg |
48731635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University