View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_high_20 (Length: 263)
Name: NF17956_high_20
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42224359 - 42224604
Alignment:
| Q |
1 |
ttgacccaattgtggtggaagtgtaccattgagatcgttcatagctaattgaatgacattgaggagtgagagatgagaaaattggaatggaatttggcca |
100 |
Q |
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| T |
42224359 |
ttgacccaattgtggtggaagtgtgccattgagatcgttcatagctaattgaatgacattgaggagtgagagatgagaaaattggaatggaatttggcca |
42224458 |
T |
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| Q |
101 |
tggaaagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttagggggtagtttaccagagagtttaagtcctgataaggttagag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224459 |
tgaaaagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttagggggtagtttaccagagagtttaagtcctgataaggttagag |
42224558 |
T |
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| Q |
201 |
attgaattctttcatcaactttggaacagttgacaccgtaccaggt |
246 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
42224559 |
attgaactctttcatcaactttggaacagttgacaccataccaggt |
42224604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42212143 - 42212388
Alignment:
| Q |
1 |
ttgacccaattgtggtggaagtgtaccattgagatcgttcatagctaattgaatgacattgaggagtgagagatgagaaaattggaatggaatttggcca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212143 |
ttgacccaattgtggtggaagtgtgccattgagatcgttcatagctaattgaatgacattgaggagtgagagatgagaaaattggaatggaatttggcca |
42212242 |
T |
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| Q |
101 |
tggaaagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttagggggtagtttaccagagagtttaagtcctgataaggttagag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
42212243 |
tgaaaagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttagagggtagtttaccagagaggccaagtccccgtaaggttagag |
42212342 |
T |
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| Q |
201 |
attgaattctttcatcaactttggaacagttgacaccgtaccaggt |
246 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
42212343 |
attgaactctttcatcaactttggaacagttgacaccataccaggt |
42212388 |
T |
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