View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_high_21 (Length: 247)
Name: NF17956_high_21
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20374022 - 20374253
Alignment:
| Q |
1 |
aaatggaattaacataagtttaaagaaatatgatgaatctaattttcgttctctcatcaattgatttgtatcacttgctcactaaatagtgagttccccg |
100 |
Q |
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| T |
20374022 |
aaatggaattaacataagtttgaagaaatatgatgaatctaattttcgttctctcatcaattgatttgtatcacttgctcactaaatagtgagttccccg |
20374121 |
T |
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| Q |
101 |
ctttcaactgccatgttgacgacaatatcacccccaatagcaatagcaaaacagattcaatagcaaatatataatcattcaacagtacaatcaaattaaa |
200 |
Q |
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| T |
20374122 |
ctttcaactgccatgatgacgacaatatcacccccaatagcaatagcaaaacagattcaatagcaaatatataatcattcaacagtacaatcaaattaaa |
20374221 |
T |
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| Q |
201 |
gtaatcatgagttaattataatagaaagaaat |
232 |
Q |
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| T |
20374222 |
gtaatcatgagttaattataatagaaggaaat |
20374253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20423308 - 20423244
Alignment:
| Q |
1 |
aaatggaattaacataagtttaaagaaatatgatgaatctaattttcgttctctcatcaattgat |
65 |
Q |
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| T |
20423308 |
aaatggaattactataagtttgaagatatatgatgaatctaattttcgttgtctcatcaattgat |
20423244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20407679 - 20407615
Alignment:
| Q |
1 |
aaatggaattaacataagtttaaagaaatatgatgaatctaattttcgttctctcatcaattgat |
65 |
Q |
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||||| |||||| |||||||| |||| |||||||||| |||||||||||| |||||||||||||| |
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| T |
20407679 |
aaatgcaattaatataagtttgaagatatatgatgaacctaattttcgttttctcatcaattgat |
20407615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 13397800 - 13397758
Alignment:
| Q |
75 |
ttgctcactaaatagtgagttccccgctttcaactgccatgtt |
117 |
Q |
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| T |
13397800 |
ttgctcactaaatagttagttccccgctttcaactgccatgtt |
13397758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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