View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_high_23 (Length: 237)
Name: NF17956_high_23
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 6409970 - 6410172
Alignment:
| Q |
14 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaa |
113 |
Q |
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| T |
6409970 |
agattagtctggaagagtataaagcagctgcaaaatctttggataaggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaa |
6410069 |
T |
|
| Q |
114 |
agatggcttcatagactttaaagagtttatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgat |
213 |
Q |
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| T |
6410070 |
agatggcttcatagactttaaagagttcatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgat |
6410169 |
T |
|
| Q |
214 |
ata |
216 |
Q |
| |
|
||| |
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|
| T |
6410170 |
ata |
6410172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 6399789 - 6399584
Alignment:
| Q |
14 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctga |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||| |
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| T |
6399789 |
agattagtctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
6399690 |
T |
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| Q |
111 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6399689 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
6399590 |
T |
|
| Q |
211 |
gatata |
216 |
Q |
| |
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|||||| |
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| T |
6399589 |
gatata |
6399584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 6412713 - 6412918
Alignment:
| Q |
14 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctga |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||| |
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| T |
6412713 |
agattagtctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
6412812 |
T |
|
| Q |
111 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6412813 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
6412912 |
T |
|
| Q |
211 |
gatata |
216 |
Q |
| |
|
|||||| |
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|
| T |
6412913 |
gatata |
6412918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 6405396 - 6405257
Alignment:
| Q |
23 |
tggaagagtataaagcagctgcaaaagctttggataaggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggctt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | ||||||| |||||||||||| || |
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| T |
6405396 |
tggaagagtataaagcagctgcaaaagctttggataagggggtaggggatactgatgcagtgaaagcatttaaggccatggactatgacaaagatggatt |
6405297 |
T |
|
| Q |
123 |
catagactttaaagagtttatggaaatgttcaatggagaa |
162 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
6405296 |
catagactttagagagtttatggaaatgttcaatggagaa |
6405257 |
T |
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