View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17956_low_10 (Length: 425)

Name: NF17956_low_10
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17956_low_10
NF17956_low_10
[»] chr4 (9 HSPs)
chr4 (39-408)||(31482196-31482566)
chr4 (39-212)||(31529098-31529268)
chr4 (45-119)||(31030408-31030482)
chr4 (1-39)||(2546987-2547025)
chr4 (45-119)||(31020527-31020601)
chr4 (45-111)||(31488951-31489017)
chr4 (44-102)||(31162323-31162383)
chr4 (39-111)||(31151039-31151111)
chr4 (45-101)||(31476366-31476422)
[»] chr6 (12 HSPs)
chr6 (161-234)||(31566587-31566660)
chr6 (39-111)||(12781413-12781485)
chr6 (162-224)||(33288129-33288191)
chr6 (161-234)||(9169402-9169475)
chr6 (1-38)||(30689767-30689804)
chr6 (39-111)||(12785603-12785675)
chr6 (160-225)||(33403164-33403229)
chr6 (39-109)||(12782166-12782236)
chr6 (162-224)||(33265436-33265498)
chr6 (162-224)||(33274580-33274642)
chr6 (160-234)||(33307030-33307104)
chr6 (160-205)||(12781322-12781367)
[»] chr2 (4 HSPs)
chr2 (1-40)||(31180184-31180223)
chr2 (1-39)||(24039425-24039463)
chr2 (1-38)||(24038231-24038268)
chr2 (160-234)||(17438151-17438225)
[»] scaffold0862 (1 HSPs)
scaffold0862 (1-39)||(189-227)
[»] chr8 (3 HSPs)
chr8 (1-39)||(7275277-7275315)
chr8 (1-38)||(7277882-7277919)
chr8 (1-37)||(13856639-13856675)
[»] chr7 (3 HSPs)
chr7 (1-39)||(41832573-41832611)
chr7 (1-38)||(41830168-41830205)
chr7 (1-38)||(8083522-8083559)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-38)||(111677-111714)
[»] chr5 (3 HSPs)
chr5 (1-38)||(21254116-21254153)
chr5 (1-38)||(26873294-26873331)
chr5 (1-39)||(21256587-21256625)
[»] chr1 (1 HSPs)
chr1 (1-38)||(18705841-18705878)
[»] scaffold0525 (1 HSPs)
scaffold0525 (1-39)||(2161-2199)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-38)||(4583-4620)
[»] chr3 (2 HSPs)
chr3 (1-38)||(10018911-10018948)
chr3 (1-38)||(10256225-10256262)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 39 - 408
Target Start/End: Original strand, 31482196 - 31482566
Alignment:
Q  39 gaagcctctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattggtacacatctttcttcactgcggtcaac 138  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  31482196 gaagtctctcagattttcatcgtggtcttgtctaagagttatgcttcctcaacttggtgcttgcgtgaattggtatacatccttcttcactgcagtcaac 31482295  T
Q  139 catcggaaaaacgtgttcggactgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagcctttgccgaacatgnnnn 238  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||        
T  31482296 catcagaaaaacgtgttcggactgttttctatgatgtcaatccatctgaggtacgaaagcaaagtgggagttatgctaaagcctttgccaaacatgaaga 31482395  T
Q  239 nnnntatggtcaggattctgagaaagttcgacaatggagggaagctctcacacaagcgggtaacatctctggatgtgatctaggtaataagtaagtcatc 338  Q
        |  |||||||||  || |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  31482396 aaatttcggtcaggatcatgtgaaagttcgacaatggagggaagctctcacacaagcaggcaacatctctggatgtgatctaggtaataagtaagtcatc 31482495  T
Q  339 ttctctgatgtttatggtcttgcttgtgtaattttaggctttgactaacagatc-agtaaatgatgattta 408  Q
    ||||||||||||||||||||||||| | || ||||| ||||||||||||||||| ||||||||| ||||||    
T  31482496 ttctctgatgtttatggtcttgcttatatagttttaagctttgactaacagatctagtaaatgacgattta 31482566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 31529268 - 31529098
Alignment:
Q  39 gaagcctctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattggtacacatctttcttcactgcggtcaac 138  Q
    |||||||||| || |||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||  | |||||   ||||| ||||  ||||    
T  31529268 gaagcctctcggactttcattgttgtcttctcaaacaactatgcttcctcaacttggtgcttgcgggaattgcaatacatc---cttcattgcgtacaac 31529172  T
Q  139 catcggaaaaacgtgttcggactgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttat 212  Q
      || | |||||||||||   ||||||||||||||||  |||| || ||||| |||||||||||||||||||||    
T  31529171 tttctggaaaacgtgttctccctgttttctatgatgttgatccttccgaggtgcgaaagcaaagtgggagttat 31529098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 31030482 - 31030408
Alignment:
Q  45 tctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattggtacacatc 119  Q
    |||||| ||||||| | |||| | || || ||||||||||||||||||||||||||||| |||||||||||||||    
T  31030482 tctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatc 31030408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2547025 - 2546987
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaatag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2547025 tactaggactaatatgctactaatctatatctctaatag 2546987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 31020601 - 31020527
Alignment:
Q  45 tctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattggtacacatc 119  Q
    |||||| ||||||| | |||| | || || |||||| |||||||||||||||||||||| |||||||||||||||    
T  31020601 tctcaggttttcattgcggtcctctccaaaaactattcttcctcaacttggtgcttgcgagaattggtacacatc 31020527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 31488951 - 31489017
Alignment:
Q  45 tctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattgg 111  Q
    |||||| ||||||| | |||| | || || ||||||||||||||||||||||||||||| |||||||    
T  31488951 tctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattgg 31489017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 31162383 - 31162323
Alignment:
Q  44 ctctcagattttcatcgtggtcttgtctaagaactatgcttcctcaac--ttggtgcttgc 102  Q
    ||||| ||||||||| ||||| || |||||||||||||||||||||||  |||||||||||    
T  31162383 ctctctgattttcattgtggtattttctaagaactatgcttcctcaactattggtgcttgc 31162323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 31151111 - 31151039
Alignment:
Q  39 gaagcctctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattgg 111  Q
    |||| ||||||||||||  | ||||| || |||||||||||||||||||||  |||||| ||||| |||||||    
T  31151111 gaagactctcagatttttgttgtggttttctctaagaactatgcttcctcagtttggtgtttgcgagaattgg 31151039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 31476366 - 31476422
Alignment:
Q  45 tctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttg 101  Q
    |||||| ||||| | ||||||||||| |||||||| |||| ||||||||||||||||    
T  31476366 tctcaggttttcgttgtggtcttgtcaaagaactacgctttctcaacttggtgcttg 31476422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 31566587 - 31566660
Alignment:
Q  161 tgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagcctttgccgaacatg 234  Q
    |||||||||||||||  |||| |||||||| |||||||||||||||| |||| ||||||| |||||| ||||||    
T  31566587 tgttttctatgatgttgatccttctgaggttcgaaagcaaagtgggatttattctgaagcttttgccaaacatg 31566660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 12781485 - 12781413
Alignment:
Q  39 gaagcctctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattgg 111  Q
    |||||||||||| ||| ||| || || || ||||||||||||||||||||||||||||| ||||| |||||||    
T  12781485 gaagcctctcaggtttacattgttgtattctctaagaactatgcttcctcaacttggtgtttgcgagaattgg 12781413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 33288191 - 33288129
Alignment:
Q  162 gttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagccttt 224  Q
    ||||||||||||||  |||| |||||||| |||||||||||||||| ||||| ||||||||||    
T  33288191 gttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaagccttt 33288129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 9169475 - 9169402
Alignment:
Q  161 tgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagcctttgccgaacatg 234  Q
    |||||||||||||||  |||| |||||||| |||||||||||||||| ||||  |||||| |||||| ||||||    
T  9169475 tgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttattgtgaagcatttgccaaacatg 9169402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30689767 - 30689804
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30689767 tactaggactaatatgctactaatctatatctctaata 30689804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 12785675 - 12785603
Alignment:
Q  39 gaagcctctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaattgg 111  Q
    |||||||||||| ||| ||| || || || ||||||||||||||||| ||||||||||| ||||| |||||||    
T  12785675 gaagcctctcagctttacattgttgtattctctaagaactatgcttcttcaacttggtgtttgcgagaattgg 12785603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 33403229 - 33403164
Alignment:
Q  160 ctgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagcctttg 225  Q
    ||||||||||||||||  |||| |||||||| |||||||||||||| | ||||  |||||||||||    
T  33403229 ctgttttctatgatgttgatccttctgaggttcgaaagcaaagtggtatttattgtgaagcctttg 33403164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 12782236 - 12782166
Alignment:
Q  39 gaagcctctcagattttcatcgtggtcttgtctaagaactatgcttcctcaacttggtgcttgcgtgaatt 109  Q
    |||| ||||||| ||||||| || || || ||||| ||||||||||| ||||||||||| ||||| |||||    
T  12782236 gaaggctctcaggttttcattgttgtattctctaaaaactatgcttcttcaacttggtgtttgcgagaatt 12782166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 33265498 - 33265436
Alignment:
Q  162 gttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagccttt 224  Q
    ||||||||||||||  |||| ||||| ||  ||||||||||||||| ||||| ||||||||||    
T  33265498 gttttctatgatgttgatccctctgatgtgagaaagcaaagtgggatttatggtgaagccttt 33265436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 33274642 - 33274580
Alignment:
Q  162 gttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagccttt 224  Q
    ||||||||||||||  |||| ||||| ||  ||||||||||||||| ||||| ||||||||||    
T  33274642 gttttctatgatgttgatccctctgatgtgagaaagcaaagtgggatttatggtgaagccttt 33274580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 33307104 - 33307030
Alignment:
Q  160 ctgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagcctttgccgaacatg 234  Q
    ||||||| ||||||||  |||| |||| ||| |||||||||||||||| ||||  ||||||||||| | ||||||    
T  33307104 ctgttttttatgatgttgatccttctgtggttcgaaagcaaagtgggatttattgtgaagcctttgtcaaacatg 33307030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 12781367 - 12781322
Alignment:
Q  160 ctgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgg 205  Q
    ||||||||||||||||  |||| |||||||||| ||||||||||||    
T  12781367 ctgttttctatgatgttgatccttctgaggtacaaaagcaaagtgg 12781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31180223 - 31180184
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaataga 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31180223 tactaggactaatatgctactaatctatatctctaataga 31180184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24039463 - 24039425
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaatag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24039463 tactaggactaatatgctactaatctatatctctaatag 24039425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24038268 - 24038231
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24038268 tactaggactaatatgctactaatctatatctctaata 24038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 17438151 - 17438225
Alignment:
Q  160 ctgttttctatgatgtcaatccgtctgaggtacgaaagcaaagtgggagttatgctgaagcctttgccgaacatg 234  Q
    ||||||||||||||||  |||| |||||||| |||||||||||||||| ||||  |||||| |||| | ||||||    
T  17438151 ctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatg 17438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 227 - 189
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaatag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  227 tactaggactaatatgctactaatctatatctctaatag 189  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7275277 - 7275315
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaatag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7275277 tactaggactaatatgctactaatctatatctctaatag 7275315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7277882 - 7277919
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7277882 tactaggactaatatgctaataatctatatctctaata 7277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13856675 - 13856639
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaat 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  13856675 tactaggactaatatgccactaatctatatctctaat 13856639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41832611 - 41832573
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaatag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41832611 tactaggactaatatgctactaatctatatctctaatag 41832573  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41830205 - 41830168
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41830205 tactaggactaatatgctactaatctatatctctaata 41830168  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8083522 - 8083559
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8083522 tactaggactaatatgctactaatctatatctttaata 8083559  T

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Target: scaffold0023 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 111677 - 111714
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  111677 tactaggactaatatgctactaatctatatctctaata 111714  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21254153 - 21254116
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21254153 tactaggactaatatgctactaatctatatctctaata 21254116  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26873294 - 26873331
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26873294 tactaggactaatatgctactaatctatatctctaata 26873331  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21256625 - 21256587
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaatag 39  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  21256625 tactatgactaatatgctactaatctatatctctaatag 21256587  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18705841 - 18705878
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18705841 tactaggactaatatgctactaatctatatctctaata 18705878  T

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Target: scaffold0525 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2161 - 2199
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaatag 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2161 tactaggactaatatgctattaatctatatctctaatag 2199  T

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Target: scaffold0251 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4620 - 4583
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4620 tactaggactaatatgctactaatctatatatctaata 4583  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10018911 - 10018948
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  10018911 tactagaactaatatgccactaatctatatctctaata 10018948  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10256225 - 10256262
Alignment:
Q  1 tactaggactaatatgctactaatctatatctctaata 38  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  10256225 tactagaactaatatgccactaatctatatctctaata 10256262  T

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